DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15412 and skp2

DIOPT Version :10

Sequence 1:NP_001259996.1 Gene:CG15412 / 33553 FlyBaseID:FBgn0031528 Length:486 Species:Drosophila melanogaster
Sequence 2:XP_068072015.2 Gene:skp2 / 563708 ZFINID:ZDB-GENE-030219-158 Length:510 Species:Danio rerio


Alignment Length:367 Identity:63/367 - (17%)
Similarity:127/367 - (34%) Gaps:131/367 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 AQLGATPNIYQDLLRVILSSDYLDANMRFTCLQMLLNCGVTFLMTEVFPFS---YYEKILQVIAA 112
            |||.|.       |..:||:..|......||:..........|..:...||   ....:|:.:.:
Zfish   237 AQLDAE-------LGQVLSAGVLRLRCPHTCIGQPSFKSTPSLRVQHLDFSNCTVETSVLEDVLS 294

  Fly   113 QGAGLRVLNIKGIWVKEEHMHYMYDIVRKCKQLVKL-------YVPYIANDRLLEEIGNCCTRLQ 170
            :...|:.|:::|:.:.:   :.:|.:.:. .::::|       :.|     ..|.|:...|||::
Zfish   295 RCKHLQNLSLEGLVLSD---NIIYSLAQN-PEIIRLNLCGCSGFSP-----ESLTEMLTACTRIE 350

  Fly   171 ILDISGETDITEIGIDLLAKGVCSQSLTVVDVGMPG-EENICYSDIALILEHCPQVETLSTYSFV 234
            .:::|. .|.:.:.|..:|..:.|   :|..:.:.| .:|:...|:..|::.||.:..|.     
Zfish   351 EMNVSW-CDFSNLHIQAIASNIPS---SVSQLNISGYRQNLTMEDVKAIVKRCPNITDLD----- 406

  Fly   235 GASLKFIHDNVDDRFKCRLKYIHDTGTDEATLQVIMQTCPRLETLYLDSPKTGSLRALSTRNLRK 299
                  :.|:|                                                      
Zfish   407 ------LSDSV------------------------------------------------------ 411

  Fly   300 LKIYKFVVAELLPLLERPIGRNLRHLTMIKGLGNLELGKLARLCP-SLIDLDCYMIDSLSYGAGH 363
                 .|..:..|:|::           :..|.:|.|.:..::.| ||||.:             
Zfish   412 -----LVTTDSFPVLQQ-----------LSSLRHLGLSRCYQIHPASLIDFE------------- 447

  Fly   364 AKFQQLEGLEILSSAILTSSLKAFLCNSTDLKRLAVDTVEFT 405
             ||..|:.||:.  .::..|....||.|  |..:.::|..|:
Zfish   448 -KFLNLQTLEVF--GLIQDSYLPILCKS--LPHIQINTQPFS 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15412NP_001259996.1 AMN1 <142..>228 CDD:187754 19/93 (20%)
leucine-rich repeat 145..168 CDD:275381 5/29 (17%)
leucine-rich repeat 169..196 CDD:275381 5/26 (19%)
leucine-rich repeat 197..224 CDD:275381 6/27 (22%)
leucine-rich repeat 225..252 CDD:275381 3/26 (12%)
leucine-rich repeat 253..275 CDD:275381 0/21 (0%)
leucine-rich repeat 369..393 CDD:275381 7/23 (30%)
leucine-rich repeat 394..416 CDD:275381 3/12 (25%)
skp2XP_068072015.2 None

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