DRSC/TRiP Functional Genomics Resources

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Protein Alignment GramD1B and LAM6

DIOPT Version :9

Sequence 1:NP_995623.2 Gene:GramD1B / 33552 FlyBaseID:FBgn0085423 Length:1249 Species:Drosophila melanogaster
Sequence 2:NP_013173.1 Gene:LAM6 / 850761 SGDID:S000004062 Length:693 Species:Saccharomyces cerevisiae


Alignment Length:800 Identity:158/800 - (19%)
Similarity:275/800 - (34%) Gaps:263/800 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 SFEQSSVSAVSTSSKQIASTTAGGSPPAAAAPGANEFNGSVLRLTQAATSTSPGSISSAGNTATL 218
            ||::||...:..|..:..|....|...:.|.|..::.| |:|...:....|:..|::        
Yeast    40 SFQKSSTEHMLISPGRDGSVPLNGLKSSPADPHLSDVN-SILDNHRGGGETALTSVN-------- 95

  Fly   219 GAAPSINIVSSESTRDQTQQPQSVDPNGVAAPGDSPSSRKSSTSSKGKASQAKLSTSSSGRDEQD 283
                  ||:.:.||..        |.:||  .||:.....|:.||:.......|||.|...:.||
Yeast    96 ------NIIMATSTNG--------DSDGV--DGDAKRPSISNCSSRSSFFDTVLSTFSLKSNSQD 144

  Fly   284 ISQHRLSDLTQHELSLLRVDREQQVTSSSSTSNEKPAKTSRLSERAKKKSWYNVIYPNYKSRAED 348
                                        :.|:..|..:....||.|.||                
Yeast   145 ----------------------------TVTNEVKNIEVQFASEEANKK---------------- 165

  Fly   349 FKKLFKDVPNDERLIVDYSCALQRDILVQGRLYVSQNYVCFHANIFSWETHVSIKWKDVTAITKE 413
            |:::||.:..:.|||.||.|...|:...|||:|:|..::||::.:.:|...:.|...::..:.|.
Yeast   166 FRQMFKPLAPNTRLITDYFCYFHREFPYQGRIYLSNTHLCFNSTVLNWMAKLQIPLNEIKYLDKV 230

  Fly   414 KTALVIPNAISISSGKDKYFFATFTSRDKSFLMLFRVWQNTLMNKQFSPQEIWQHVHTCYGDELG 478
            .|.   .:|||:.:..::|.|:.|.:||:.|.::.|||...                        
Yeast   231 TTN---SSAISVETVTNRYTFSGFIARDEVFQLITRVWSKE------------------------ 268

  Fly   479 LTTDDEDYIDPTLNKTNEPDFDFQTAID-DDSYSQRQSQQSNQSNQSNPLLPQSGNSSASSGGGV 542
                         |.||..|     .:: |:..|:::...|..|:..|.:...:.|...|:    
Yeast   269 -------------NLTNIND-----VLEVDERVSKKKGISSTPSSIFNNVSTNAYNDFIST---- 311

  Fly   543 RASAPRKSKTKYFFNSSKSSANASASGSDNNKTRESSRKLNKKMKQNAKELTLSSVKPTELSVSV 607
                          .:::.::.||....::....|:.|                       ||..
Yeast   312 --------------TTTEPTSRASYMSENDMLIEEAIR-----------------------SVDD 339

  Fly   608 TMSAPNVSSSSTAGSTTASSSTIANHTGSGSGSGSLSGSNTAAASGSGSDKMSAEKKVSTASNSA 672
            .|..|..|.||::.|:::|||.               ||:|....          :.|.....:|
Yeast   340 YMGTPRASPSSSSSSSSSSSSL---------------GSSTTYYC----------RPVYRLKPNA 379

  Fly   673 AVAAAEAAQSLASASSGSGSLESKMEMKRKLGKMHRQREEGKNAAESVPTDVSDSSDSEENNLPF 737
            ..                                   :.||       |..|.::.|     .|:
Yeast   380 PF-----------------------------------QYEG-------PFHVQETMD-----FPY 397

  Fly   738 VPTTECTSTHEGRQIVHTILPINVDTLFNLLFSKSK--FITDFHAMRKSTDLV-LGEWTK-NEEG 798
            .|  |..:.:...:...::.|   ..||.::|::..  |...|...:.|:::. :|.:.| |::|
Yeast   398 KP--EANNEYVLLERQFSVPP---GLLFIMMFNEDNPVFELSFLKTQDSSNISHIGTFEKVNKDG 457

  Fly   799 LQVRTVNVTVQLAASVGPKTSKVTEYQTQRECSKPGELYSIDVNSV--NAGIPYAESFSVLIHFC 861
            ...|....|.||...||||::.....:....|.  .|.| |:|.|:  ...:|...|||....:.
Yeast   458 QHYREFQYTKQLHFPVGPKSTNCEVAEILLHCD--WERY-INVLSITRTPNVPSGTSFSTRTRYM 519

  Fly   862 LARTVDDH---TMLSIHTQIKYKKSIWGVVKGFIEKNTWAG-----------LEDFFG--AQLHA 910
            .  ..||.   .:|.|...:.:..|.|  :|..:|.|...|           :|:|..  .:|..
Yeast   520 F--RWDDQGQGCILKISFWVDWNASSW--IKPMVESNCKNGQISATKDLVKLVEEFVEKYVELSK 580

  Fly   911 LQSETCIP-PAKGKGRRPRR 929
            .:::|..| |:......||:
Yeast   581 EKADTLKPLPSVTSFGSPRK 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GramD1BNP_995623.2 PH-GRAM_GRAMDC 358..451 CDD:275406 28/92 (30%)
DUF4782 751..897 CDD:292635 38/154 (25%)
LAM6NP_013173.1 PH-GRAM_GRAMDC 175..265 CDD:275406 28/92 (30%)
DUF4782 406..556 CDD:406424 38/159 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1032
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000885
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101929
Panther 1 1.100 - - O PTHR23319
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.770

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