DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GramD1B and Gramd1a

DIOPT Version :9

Sequence 1:NP_995623.2 Gene:GramD1B / 33552 FlyBaseID:FBgn0085423 Length:1249 Species:Drosophila melanogaster
Sequence 2:XP_006540247.1 Gene:Gramd1a / 52857 MGIID:105490 Length:807 Species:Mus musculus


Alignment Length:1134 Identity:298/1134 - (26%)
Similarity:447/1134 - (39%) Gaps:379/1134 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 AP-GSNAG--DRRDSITEEITITSTTN--SSQSTKLLTIQEAAGSFEQSSVSAVSTSSKQIASTT 174
            || |:..|  |...|.||:.|.|....  |.:|.:||.:                 .:..|..::
Mouse    11 APQGAQDGNQDSAGSPTEQQTQTDKVQDLSPKSWRLLGV-----------------PTIHITPSS 58

  Fly   175 AGGSPPAAAAPGANEFNGSVLR-LTQAATSTSPGSISSAGNTATLGAAPSINIVSSESTRDQTQQ 238
            .|.|||  ..|....|....|. |.|.:|:...|.           ::||    ||.|.|.:.|.
Mouse    59 DGESPP--GTPTTPRFQTLDLECLPQDSTTPHSGR-----------SSPS----SSPSLRKRLQL 106

  Fly   239 PQSVDPNGVAAPGDSPSSRKSSTSSKGKAS-QAKLSTSSSGRDEQDISQHRLSDLTQHELSLLRV 302
            ...:.|...:.|.......|.|.||..|:. ...|||.|.|                        
Mouse   107 LPPIRPPPASEPEPGTMVEKGSDSSSEKSGVSGTLSTQSLG------------------------ 147

  Fly   303 DREQQVTSSSSTSNEKPAKTSRLSERAKKKSWYNVIYPNYKSRAEDFKKLFKDVPNDERLIVDYS 367
                   |.:...|.|           |.:|||:::.|.||.|.|||:|||..:|..||||||||
Mouse   148 -------SRNFIRNSK-----------KMQSWYSMLCPTYKQRNEDFRKLFSKLPEAERLIVDYS 194

  Fly   368 CALQRDILVQGRLYVSQNYVCFHANIFSWETHVSIKWKDVTAITKEKTALVIPNAISISSGKDKY 432
            |||||:||:|||||:|:|::||::|||.|||.:||:.|:||.:.|||||.:|||||.|.:..:|:
Mouse   195 CALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKH 259

  Fly   433 FFATFTSRDKSFLMLFRVWQNTLMNKQFSPQEIWQHVHTCYGDELGLTTDDEDYIDP-TLNKTNE 496
            ||.:|.:||:.||::||:|||.|:.|..||:|:|..||.|||.|||||::||||:.| .||....
Mouse   260 FFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVCPLQLNGLGS 324

  Fly   497 P-DFDFQTAIDDDSYSQRQSQQSNQSNQSNPLLPQSGNSSASSGGGVRASAPRKSKTKYFFNSSK 560
            | :.....|:.|.|    .|..::.|.:.:|:..:.|..:.                    |.|:
Mouse   325 PKEVGDVIALSDIS----PSGAADHSQEPSPVGSRRGRVTP--------------------NLSR 365

  Fly   561 SSANASASGSDNNKTRESSRKLNKKMKQNAKELTLSSVKPTELSVSVTMSAPNVSSSSTAGSTTA 625
            :|::|. .|::.:|            ::....|..||      |.:||..|..:||..|...   
Mouse   366 ASSDAD-HGAEEDK------------EEQTDGLDASS------SQTVTPVAEPLSSEPTPPD--- 408

  Fly   626 SSSTIANHTGSGSGSGSLSGSNTAAASGSGSDKMSAEKKVSTASNSAAVAAAEAAQSLASASSGS 690
                     |..|..|.|             |.:|.|:.::..|||             |:|:| 
Mouse   409 ---------GPTSSLGPL-------------DLLSREELLTDTSNS-------------SSSTG- 437

  Fly   691 GSLESKMEMKRKLGKMHRQREEGKNAAESVPTDVSDSSDSEENNLPFVPTTECTSTHEGRQIVHT 755
                                |||..||  :..|:|                       ||.::::
Mouse   438 --------------------EEGDLAA--LLPDLS-----------------------GRLLINS 457

  Fly   756 ILPINVDTLFNLLFSKSKFITDFHAMRKSTDLVLGEWTKNEEGLQVRTVNVTVQLAASVGPKTSK 820
            :..:..:.|..:|||.|.|:..|...||.||:.|..|:.:.:..|.|.:..|:.::..:|||::.
Mouse   458 VFHMGAERLQQMLFSDSPFLQGFLQQRKFTDVTLSPWSSDSKCHQRRVLTYTIPISNQLGPKSAS 522

  Fly   821 VTEYQTQ-RECSKPGELYSIDVNSVNAGIPYAESFSVLIHFCLARTVDDHTMLSIHTQIKYKKSI 884
            |.|.||. |...:.|... :|...:..||||.:.|.....:|:.....:...|.:.::|:|:|..
Mouse   523 VVETQTLFRRGPQAGGCV-VDSEVLTQGIPYQDYFYTAHRYCILGLARNKARLRVSSEIRYRKQP 586

  Fly   885 WGVVKGFIEKNTWAGLEDFFGAQLHALQSETCIPPAKGKGRRPRRGMNQQSATSTSTTSITTGAL 949
            |.:||..||||:|:|:||:|    |.|..|.    ||.:......|       ...|..:.:|  
Mouse   587 WSLVKSLIEKNSWSGIEDYF----HHLDREL----AKAEKLSLEEG-------GKDTRGLLSG-- 634

  Fly   950 HTATSTDNDSIQESRHPHQQDQHQHQHLHMHHHHHHHHGSQHHHHDARHSHHHHHQPLLPHHQQQ 1014
                      ::..:.|..             ...|..|.||                       
Mouse   635 ----------LRRRKRPLS-------------WRGHRDGPQH----------------------- 653

  Fly  1015 HPHHWHHRKALLQSGRGTATQIRPLEEAVGPAPAVDP-LETQMLAAGGIPGAAVGAAAGHPLLLE 1078
                                            |..|| .:|.|..:|.:                
Mouse   654 --------------------------------PDPDPCTQTSMHTSGSL---------------- 670

  Fly  1079 GGKQQQLHHQQQMHHHHLQPHKQHLQQQQLHLGGGDGQPLASGQGSQGHRLRHKGLWLLVILLLC 1143
                                 .....:..:..|.|.|.|.|               .:|:.:::|
Mouse   671 ---------------------SSRFSEPSVDQGPGAGIPSA---------------LVLISIVIC 699

  Fly  1144 ----LMLALNVILLLKLWRLEERIDVDLNRRAR----MPSLA-ALSELPSTNQEWLELLRDQEMA 1199
                :::|||.:|..:||.||        |.|.    ..||| |..:.|.|..||.|:|..|:..
Mouse   700 VSLIVLIALNALLFYRLWSLE--------RTAHTFESWHSLALAKGKFPQTATEWAEILALQKHF 756

  Fly  1200 HENELHKWQQVLQTAIELLKKVSIVCEKI 1228
            |..|:|||:|:|:.::|||.::....||:
Mouse   757 HSVEVHKWRQILRASVELLDEMKFSLEKL 785

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GramD1BNP_995623.2 PH-GRAM_GRAMDC 358..451 CDD:275406 56/92 (61%)
DUF4782 751..897 CDD:292635 43/146 (29%)
Gramd1aXP_006540247.1 PH-GRAM_GRAMDC 185..278 CDD:275406 56/92 (61%)
DUF4782 458..601 CDD:374299 44/143 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167844891
Domainoid 1 1.000 153 1.000 Domainoid score I4273
eggNOG 1 0.900 - - E1_KOG1032
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 293 1.000 Inparanoid score I2744
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000885
OrthoInspector 1 1.000 - - otm43980
orthoMCL 1 0.900 - - OOG6_101929
Panther 1 1.100 - - LDO PTHR23319
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1861
SonicParanoid 1 1.000 - - X567
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.780

Return to query results.
Submit another query.