DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GramD1B and Gramd1b

DIOPT Version :9

Sequence 1:NP_995623.2 Gene:GramD1B / 33552 FlyBaseID:FBgn0085423 Length:1249 Species:Drosophila melanogaster
Sequence 2:XP_017168808.1 Gene:Gramd1b / 235283 MGIID:1925037 Length:897 Species:Mus musculus


Alignment Length:1182 Identity:312/1182 - (26%)
Similarity:482/1182 - (40%) Gaps:367/1182 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 NSSQSTKL--LTIQEAAGSFEQSSV-SAVST-------------SSKQIASTTAG-GSP--PAAA 183
            |..::.:|  |.:.|..|:.|.|:| |:.||             .:.|..|..|| .:|  |...
Mouse     5 NMMENLQLPALQVPEPQGAPEGSAVWSSSSTPTLRRRRFKMRRMKNVQEQSLEAGLVAPDLPGVL 69

  Fly   184 APGANEFNGSVLRLTQAATSTSPGSISSAGNTATLGAAPS---------INI----VSSESTRDQ 235
            |||........:.:|.::...:|.|     |.:|..|:|.         :.:    ..|||:..|
Mouse    70 APGKEFLQLPSIEITPSSDEDTPWS-----NCSTPSASPRRKRFLLRKWLRVRERKECSESSSQQ 129

  Fly   236 TQQPQSVDPNGVAAPGDSPSSRKSSTSSKGKASQAKLSTSSSGRDEQDISQHRLSDL-----TQH 295
            :.|..|.|.:  ::...||..|..||:|....|....|.....|......|::..|.     :.|
Mouse   130 SSQQSSHDDD--SSRFLSPRVRDESTASNSNRSTPACSPILRKRSRSPTPQNQDGDTMVEKGSDH 192

  Fly   296 ELSLLRVDREQQVTSS-----------SSTSNEKPAKTSRLSERAKKKSWYNVIYPNYKSRAEDF 349
            .........||.|..|           :|.|:::.:|..||:...|.:|||||:.|.||.|.|||
Mouse   193 SSDKSPSTPEQGVQRSCSSQSGRSGGKNSKSHKRLSKYDRLNLIKKSQSWYNVLSPTYKQRNEDF 257

  Fly   350 KKLFKDVPNDERLIVDYSCALQRDILVQGRLYVSQNYVCFHANIFSWETHVSIKWKDVTAITKEK 414
            :||||.:|:.||||||||||||||||:|||||:|:|::||::|||.|||.::::.||:.::||||
Mouse   258 RKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEK 322

  Fly   415 TALVIPNAISISSGKDKYFFATFTSRDKSFLMLFRVWQNTLMNKQFSPQEIWQHVHTCYGDELGL 479
            ||.:|||||.:.:..:|:||.:|.:||::::|:||:|||.|:.|...|:|:|..||.|||:||||
Mouse   323 TARLIPNAIQVCTDSEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGL 387

  Fly   480 TTDDEDYIDPTLNKTNEPDFDFQTAIDDDSYSQRQSQQSNQSNQSNPLLPQSGNSSASSGGGVRA 544
            |:|||||:        .||.||.|.    .|.:....:.|:.|.|                    
Mouse   388 TSDDEDYV--------PPDDDFNTM----GYCEEIPIEENEVNDS-------------------- 420

  Fly   545 SAPRKSKTKYFFNSSKSSANASASGSDNNKTRESSRKLNKKMKQNAKELTLSSVKPTELSVSVTM 609
                         |||||.                                 ..||.        
Mouse   421 -------------SSKSSI---------------------------------ETKPD-------- 431

  Fly   610 SAPNVSSSSTAGSTTASSSTIANHTGSGSGSGSLSGSNTAAASGSGSDKMSAEKKVSTASNSAAV 674
            ::|.:...|...||..|                 :||:.|..|..|   :..|::|         
Mouse   432 ASPQLPKKSITNSTLTS-----------------TGSSEAPVSFDG---LPLEEEV--------- 467

  Fly   675 AAAEAAQSLASASSGSGSLESKMEMKRKLGKMHRQREE----------GKNAAESVPTDVSDSSD 729
                        ..|.||||.::.:...:|    ::.|          ..|..|.:||::|||||
Mouse   468 ------------MEGDGSLEKELAIDNIIG----EKIEIMAPVTSPSLDFNDNEDIPTELSDSSD 516

  Fly   730 SEENNLPFVPTTECTSTHE---GRQIVHTILPINVDTLFNLLFSKSKFITDFHAMRKSTDLVLGE 791
            :.:..       |..:.:|   |||.|:.:...:||.|::|||:.|.|:.||...|:.:|::...
Mouse   517 THDEG-------EVQAFYEDLSGRQYVNEVFNFSVDKLYDLLFTNSPFLRDFMEQRRFSDIIFHP 574

  Fly   792 WTKNEEGLQVRTVNVTVQLAASVGPKTSKVTEYQTQRECSKPGELYSIDVNSVNAGIPYAESFSV 856
            |.|.|.|.|.|.:..|:.|...:.|||:.|.|.||..:.|:..|.|.||...:...:||.:.|..
Mouse   575 WKKEENGNQSRVILYTITLTNPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYT 639

  Fly   857 LIHFCLARTVDDHTMLSIHTQIKYKKSIWGVVKGFIEKNTWAGLEDFFGAQLHALQSETCIPPAK 921
            :..:.|.|...:.:.|.:.|:::|:|..||.||.|||||.|:||||:|    ..|::|.      
Mouse   640 INRYTLTRVARNKSRLRVSTELRYRKQPWGFVKTFIEKNFWSGLEDYF----RHLETEL------ 694

  Fly   922 GKGRRPRRGMNQQSATSTSTTSITTGALHTAT----STDNDSIQESRHPHQQDQHQHQHLHMHHH 982
                             |.|.|.....:|..:    ::.:.:::..:.|       |.||.:.| 
Mouse   695 -----------------TKTESTYLAEIHRQSPKEKASKSSAVRRRKRP-------HAHLRVPH- 734

  Fly   983 HHHHHGSQHHHHDARHSHHHHHQPLLPHHQQQHPHHWHHRKALLQSGRGTATQIRPLEEAVGPAP 1047
                                                                    |||.:  :|
Mouse   735 --------------------------------------------------------LEEVM--SP 741

  Fly  1048 AVDPLETQMLAAGGIPGAAVGAAAGHPLLLEGGKQQQLHHQQQMHHHHLQPHKQHLQQQQLHLGG 1112
            ...|.:..:               ||.:....|..|..|..:.      .|...|||..      
Mouse   742 VTTPTDEDV---------------GHRIKHVAGSTQTRHIPED------TPDGFHLQSV------ 779

  Fly  1113 GDGQPLASGQGSQGHRLRHKGLWLLVILLLC----LMLALNVILLLKLWRLEERIDVDLNRRARM 1173
                               ..|.|::..::|    |::.||::|..|||.||    .........
Mouse   780 -------------------SKLLLVISCVICFSLVLLVVLNMMLFYKLWMLE----YTTQTLTAW 821

  Fly  1174 PSLAALSELPSTNQEWLELLRDQEMAHENELHKWQQVLQTAIELLKKVSIVCEKITNDS--HLRQ 1236
            ..|.....||.:..||.:||..|:..|:.||.||::::::::.||.::        .||  :|:.
Mouse   822 QGLRLQERLPQSQTEWAQLLESQQKYHDTELQKWREIIKSSVLLLDQM--------KDSLINLQN 878

  Fly  1237 SIESMSMAGRTE 1248
            .|.|......::
Mouse   879 GIRSRDYTAESD 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GramD1BNP_995623.2 PH-GRAM_GRAMDC 358..451 CDD:275406 53/92 (58%)
DUF4782 751..897 CDD:292635 52/145 (36%)
Gramd1bXP_017168808.1 PH-GRAM_GRAMDC 266..359 CDD:275406 53/92 (58%)
DUF4782 538..682 CDD:374299 51/143 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167844894
Domainoid 1 1.000 153 1.000 Domainoid score I4273
eggNOG 1 0.900 - - E1_KOG1032
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 293 1.000 Inparanoid score I2744
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D322809at33208
OrthoFinder 1 1.000 - - FOG0000885
OrthoInspector 1 1.000 - - otm43980
orthoMCL 1 0.900 - - OOG6_101929
Panther 1 1.100 - - O PTHR23319
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1861
SonicParanoid 1 1.000 - - X567
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.790

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