DRSC/TRiP Functional Genomics Resources

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Protein Alignment GramD1B and Gramd1c

DIOPT Version :9

Sequence 1:NP_995623.2 Gene:GramD1B / 33552 FlyBaseID:FBgn0085423 Length:1249 Species:Drosophila melanogaster
Sequence 2:XP_006521957.1 Gene:Gramd1c / 207798 MGIID:2443024 Length:662 Species:Mus musculus


Alignment Length:697 Identity:179/697 - (25%)
Similarity:310/697 - (44%) Gaps:196/697 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 QQVTSSSSTS-----NEKPAKT-------SRLSERAKKKSWYN--------VIYPNYKSRAEDFK 350
            :|:.:...:|     .|:|.::       :.:|.:.:.:|.:|        :....||.|.|:::
Mouse     8 RQIVNEGDSSLATELQEEPEESPGPVVDENIVSAKKQGQSTHNWSGDWSFWISSSTYKDRNEEYR 72

  Fly   351 KLFKDVPNDERLIVDYSCALQRDILVQGRLYVSQNYVCFHANIFSWETHVSIKWKDVTAITKEKT 415
            :.|..:|:.|:||.||:||||:|||||||||:|:.::||::|||.|||.:||..|::|.:|||||
Mouse    73 QQFTHLPDSEKLIADYACALQKDILVQGRLYLSEKWLCFYSNIFRWETTISIALKNITFMTKEKT 137

  Fly   416 ALVIPNAISISSGKDKYFFATFTSRDKSFLMLFRVWQNTLMNKQFSPQEIWQHVHTCYGDELGLT 480
            |.:|||||.|.:..:|:||.:|.:||:|:|::||:|||.|::|..:.||.||.:...||.||||.
Mouse   138 ARLIPNAIQIITEGEKFFFTSFGARDRSYLIIFRLWQNVLLDKSLTRQEFWQLLQQNYGTELGLN 202

  Fly   481 TDDEDYIDPTLNKTNEPDFDFQTAID-----DDSYSQRQSQQSNQSNQSNPLLPQSGNSSASSGG 540
            .::.::: .::.:..:|....::::|     |:.:|:..|......::::...|..|||      
Mouse   203 AEEMEHL-LSVEENVQPRSPGRSSVDDAGERDEKFSKAVSFTQESVSRASETEPLDGNS------ 260

  Fly   541 GVRASAPRKSKTKYFFNSSKSSANASASGSDNNKTRESSRKLNKKMKQNAKELTLSSVKPTELSV 605
                  |::                 ..|.:::::..:.||                        
Mouse   261 ------PKR-----------------GLGKEDSQSERNVRK------------------------ 278

  Fly   606 SVTMSAPNVSSSSTAGSTTASSSTIANHTGSGSGSGSLSGSNTAAASGSGSDKMSAEKKVSTASN 670
                                                              |..:::||::|.|. 
Mouse   279 --------------------------------------------------SPSLASEKRISRAP- 292

  Fly   671 SAAVAAAEAAQSLASASSGSGSLESKMEMKRKLGKMHRQREEGKNAAESVPTDVSDSSDS-EENN 734
                               |.||:                   .|..|.:..|.|.:||| :|.|
Mouse   293 -------------------SKSLD-------------------LNKNEYLSLDKSSTSDSVDEEN 319

  Fly   735 LPFVPTTECTSTHEGRQIVHTILPINVDTLFNLLFSKSKFITDFHAMRKSTDLVLGEWTKNEEGL 799
            :|       ....:||..::.:..|:.:.:|.|||:.|.|:..|...|...|:|...||....|.
Mouse   320 IP-------EKDLQGRLYINRVFHISAERMFELLFTSSHFMQRFANSRNIIDVVSTPWTVESGGN 377

  Fly   800 QVRTVNVTVQLAASVGPKTSKVTEYQTQRECSKPGELYSIDVNSVNAGIPYAESFSVLIHFCLAR 864
            |:||:..|:.|:..:..|.:..||.||..:.|:..:.|.:|...:...:||.:.|..|..:|:.|
Mouse   378 QLRTMTYTIVLSNPLTGKYTAATEKQTLYKESREAQFYLVDSEVLTHDVPYHDYFYTLNRYCIVR 442

  Fly   865 TVDDHTMLSIHTQIKYKKSIWGVVKGFIEKNTWAGLEDFF-GAQLHALQSETCIPPA---KGKG- 924
            :......|.:.|.:||:|..||::|..||||:|:.||.:| ..:...|..|:.:..:   .||. 
Mouse   443 SAKQRCRLRVSTDLKYRKQPWGLIKSLIEKNSWSSLESYFKKLESDLLMEESVLSQSIEDAGKHS 507

  Fly   925 --RRPRRGMNQQS------ATSTSTTSI-------TTGALHTATSTD 956
              ||.||.:|:.:      ::..|:|.:       .||...|..|.|
Mouse   508 SLRRRRRTLNRTAEPVPKLSSQRSSTDLGFEAKVDVTGKRKTVDSYD 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GramD1BNP_995623.2 PH-GRAM_GRAMDC 358..451 CDD:275406 53/92 (58%)
DUF4782 751..897 CDD:292635 45/145 (31%)
Gramd1cXP_006521957.1 PH-GRAM_GRAMDC 80..173 CDD:275406 53/92 (58%)
DUF4782 333..476 CDD:374299 45/142 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167844892
Domainoid 1 1.000 153 1.000 Domainoid score I4273
eggNOG 1 0.900 - - E1_KOG1032
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 293 1.000 Inparanoid score I2744
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D322809at33208
OrthoFinder 1 1.000 - - FOG0000885
OrthoInspector 1 1.000 - - otm43980
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23319
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X567
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.860

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