DRSC/TRiP Functional Genomics Resources

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Protein Alignment GramD1B and gramd1c

DIOPT Version :9

Sequence 1:NP_995623.2 Gene:GramD1B / 33552 FlyBaseID:FBgn0085423 Length:1249 Species:Drosophila melanogaster
Sequence 2:XP_031751644.1 Gene:gramd1c / 100491022 XenbaseID:XB-GENE-5944296 Length:678 Species:Xenopus tropicalis


Alignment Length:749 Identity:192/749 - (25%)
Similarity:304/749 - (40%) Gaps:232/749 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   342 YKSRAEDFKKLFKDVPNDERLIVDYSCALQRDILVQGRLYVSQNYVCFHANIFSWETHVSIKWKD 406
            ||.|:|:|:|:||::|..|:|||||:||||::||:|||:|:|::.:|||:|||.|||.:.::.:|
 Frog    76 YKQRSEEFRKIFKELPESEKLIVDYACALQKEILLQGRIYLSESCLCFHSNIFRWETTICLQLRD 140

  Fly   407 VTAITKEKTALVIPNAISISSGKDKYFFATFTSRDKSFLMLFRVWQNTLMNKQFSPQEIWQHVHT 471
            :|::||||||.:|||||.:|:..:|.||.:|.:||:|||.:||:|||.|::|..:.:|.||.|..
 Frog   141 ITSMTKEKTARLIPNAIQVSTENEKLFFTSFATRDRSFLNIFRMWQNVLLDKTLTKKEFWQLVQQ 205

  Fly   472 CYGDELGLTTDDEDYIDPTLNKTNEPDFDFQTAIDDDSYSQRQSQQSNQSNQSNPLLPQSGNSSA 536
            .||.:|||..::.:::                                                 
 Frog   206 SYGTDLGLNNEEMEHM------------------------------------------------- 221

  Fly   537 SSGGGVRASAPRKSKTKYFFNSSKSSANASASGSDNNKTRESSRKLNKKMKQNAKELTLSSVKPT 601
                                         |....||.:|    |.|.:.:.::..|      ||.
 Frog   222 -----------------------------SVPVEDNGQT----RLLGRAVSEDCGE------KPE 247

  Fly   602 ELSVSVTMSAPNVSSSSTAGSTTASSSTI---ANHTGSGSGSGSLSGSNTAAASGSGSDKMSAEK 663
            ::.     ...:||..:...|...|...:   .:|.....|.          .:|..|.::.|::
 Frog   248 KMP-----RGASVSQGTETDSPLLSPMQLILRQSHVEESQGE----------KAGGKSPQLGADR 297

  Fly   664 KVSTASNSAAVAAAEAAQSLASASSGSGSLESKMEMKRKLGKMHRQREEGKNAAESVPTDVSDSS 728
            |.|       :.|.....:||...:|:                     |.:|...|   ..||:.
 Frog   298 KPS-------LRATIGTPALALDLNGN---------------------ENQNLDRS---SFSDTG 331

  Fly   729 DSEENNLPFVPTTECTSTHEGRQIVHTILPINVDTLFNLLFSKSKFITDFHAMRKSTDLVLGEWT 793
            |.|:...|       ....:||..::.:..|:.:.:|.|||::|.|..:|...||..||....|.
 Frog   332 DEEDTKYP-------EEGIDGRLYINRVYQISAERMFQLLFTQSHFFVNFLGSRKVFDLECTPWQ 389

  Fly   794 KNEEGLQVRTVNVTVQLAASVGPKTSKVTEYQTQRECSKPGELYSIDVNSVNAGIPYAESFSVLI 858
            .:..|.|.||:..|:.:...:..|.:..||.|...:.::.|..||::...:...:||.:.|..:.
 Frog   390 SDGNGKQTRTLTYTITINNPLVGKFTTATEKQVLYKGNQGGLSYSVEAEVLTHDVPYHDYFYTVN 454

  Fly   859 HFCLARTVDDHTMLSIHTQIKYKKSIWGVVKGFIEKNTWAGLEDFFGAQLHALQSET----CIPP 919
            .:.:.||..|...|.:.|.::|||..||:||.|||:|:|:||||:|......|..|.    .:..
 Frog   455 KYSIVRTAQDKCRLRVCTDVRYKKQPWGLVKTFIERNSWSGLEDYFKQMESDLMIEENASGSVLA 519

  Fly   920 AKGKGRRPRRGMNQQSATSTSTTSITTGALHTATSTDNDSIQESRHPHQQDQHQHQHLHMHHHHH 984
            ..||..|.||                        ...|.|:.|                    |.
 Frog   520 EAGKSMRRRR------------------------RNPNRSLGE--------------------HL 540

  Fly   985 HHHGSQH----------HHHDARHSHHHHHQPLL-----------------------PHHQQQHP 1016
            ..||:||          ..|..|.|....:..::                       ..|..|..
 Frog   541 PKHGAQHDPTHMGLDLRKDHTGRKSAGGRNTTIILVMSIFLVLLVLLNVTLFLKLSKIEHAAQSF 605

  Fly  1017 HHWHHRK----ALLQSGRGTATQIRPLEEAV-GP 1045
            ||:||::    :|...|.|.|.|  |.:|.| ||
 Frog   606 HHFHHKQERYASLHPGGIGGADQ--PHKEKVFGP 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GramD1BNP_995623.2 PH-GRAM_GRAMDC 358..451 CDD:275406 51/92 (55%)
DUF4782 751..897 CDD:292635 44/145 (30%)
gramd1cXP_031751644.1 PH-GRAM_GRAMDC 92..185 CDD:275406 51/92 (55%)
DUF4782 347..495 CDD:406424 45/147 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 153 1.000 Domainoid score I4242
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D322809at33208
OrthoFinder 1 1.000 - - FOG0000885
OrthoInspector 1 1.000 - - otm49154
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X567
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.010

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