DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ppr-Y and Drc3

DIOPT Version :10

Sequence 1:NP_001015502.3 Gene:Ppr-Y / 3355180 FlyBaseID:FBgn0046697 Length:569 Species:Drosophila melanogaster
Sequence 2:NP_001013879.1 Gene:Drc3 / 287371 RGDID:1309150 Length:523 Species:Rattus norvegicus


Alignment Length:542 Identity:179/542 - (33%)
Similarity:297/542 - (54%) Gaps:37/542 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 YPDIEPGIINRSLIESSYLKHVHRGEGRRLHQLEPVVLEQILTMRLEFNNILRIDHLWILPNLTK 85
            |..:||.:::..:::.:..:...:.|..:|.:.|.::.:.:|.::|:|.||||||:||...||.|
  Rat     5 YDSMEPKVMDDDMLKVAVGEQGPQEEAGQLAKQEGILFKDVLALQLDFQNILRIDNLWQFENLRK 69

  Fly    86 LCLNCNKIETIENIEMLTNLKDLNLSFNFIEKIENLDTLVNLEVLSLFSNKIEAIENIDMLTMLV 150
            |.||.|.||.||.:|.||:|..|:||||.||.||.||||||||.|||..|:|..|:::|.|..|.
  Rat    70 LQLNNNIIERIEGLENLTHLVWLDLSFNNIEAIEGLDTLVNLEDLSLSHNRISKIDSLDPLVNLQ 134

  Fly   151 IISLGNNLIDTVEGIERFRFMNNLKIINLEGNPIAKRTNFCLLKYISAILPKLNYYEYTFIKSEL 215
            ::|||||.|:.:..|...|....|:.::|.|||:::...:.:  :|.|.||.|.|.::..:..:.
  Rat   135 VLSLGNNQINNMMNIIYLRRFPCLRTLSLSGNPVSEAEEYKV--FIYAYLPDLVYLDFRRVDEQA 197

  Fly   216 RAEACNLYYREIREIEDKQEKEIQARKFLEREQSEAKRLAS---SFVEHLDGHQLFDSLWRGDED 277
            |..|...:...|.|::.: |..:|.|  ||.||::.::||.   :|||||:|..||||::..|.:
  Rat   198 REVAKMKHQYSIDELKHR-EALMQIR--LEEEQAKQQKLAEHKMAFVEHLNGPFLFDSMYSDDVE 259

  Fly   278 GRVLML---VGTQAQELADEYDKDIFELTQEIYKLGLERFTERDEEIRDFFNNLFDGQEELQILG 339
            |..|..   ||    ||.:.|......:...|::.||.:..:|..|: |.||...  ||.:|   
  Rat   260 GNKLSYLPGVG----ELLEAYKDKFVIICLNIFEYGLSQQEKRKIEL-DTFNECI--QEAIQ--- 314

  Fly   340 QNEIEWFLQFREIIFEEARIRLLKLEQNSMHGEDEDTPENLKLSDALDKLNIQFEDAINDLWQAL 404
            :|:.:..|:..:  |||..:    |..|::..|.:......||::.        .::|.:|:..|
  Rat   315 ENQDQGKLKIAK--FEEKHL----LNLNAIREESDLFTMEQKLTEC--------NESITELFNTL 365

  Fly   405 MAQELYLHESIQESTIN-FHRKIAELMSKFVEQSQAFFVQLREITLHFSENMTEILTRFISTKFA 468
            |..|:.|.|.::| ||| |.|.|.:|:..|:|..|:...|.|::..|..|.:.||....:.....
  Rat   366 MILEMQLVEQLEE-TINVFERNITDLVGLFIENVQSLIAQCRDLENHHHEKLLEIAINTLEKILK 429

  Fly   469 LQDFDDVPIELRVCVDDRDAILNLIAGMKDYHTLRLDEREDTIATRTKEFVDNMIDQLNSNEVER 533
            .:..:|:|.::|....|:|.|:|.:....|.|.|::|.|||.:.|....:..:::|:::.:|:.|
  Rat   430 GEMDEDLPDDVRALFVDKDTIVNAVGASHDIHLLKIDNREDELVTGVNSWCAHLVDKIHKDEIMR 494

  Fly   534 HRSKILEINFFVEMMTDAMTSL 555
            :|.::.|||.||:.|...:.:|
  Rat   495 NRKRVKEINQFVDHMQSELDNL 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ppr-YNP_001015502.3 leucine-rich repeat 63..82 CDD:275378 10/18 (56%)
LRR <80..313 CDD:443914 94/238 (39%)
PPP1R42 82..>176 CDD:455733 50/93 (54%)
leucine-rich repeat 83..104 CDD:275378 12/20 (60%)
leucine-rich repeat 105..126 CDD:275378 14/20 (70%)
leucine-rich repeat 127..148 CDD:275378 10/20 (50%)
leucine-rich repeat 149..162 CDD:275378 7/12 (58%)
Drc3NP_001013879.1 PPP1R42 42..>192 CDD:455733 71/151 (47%)
LRR 1 44..65 11/20 (55%)
leucine-rich repeat 48..66 CDD:275378 10/17 (59%)
LRR 2 66..87 12/20 (60%)
leucine-rich repeat 67..88 CDD:275378 12/20 (60%)
LRR 3 88..109 13/20 (65%)
leucine-rich repeat 89..110 CDD:275378 14/20 (70%)
LRR 4 110..131 10/20 (50%)
leucine-rich repeat 111..132 CDD:275378 10/20 (50%)
LRR 5 132..153 8/20 (40%)
leucine-rich repeat 158..169 CDD:275378 5/10 (50%)

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