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Protein Alignment Ppr-Y and sds-22

DIOPT Version :10

Sequence 1:	NP_001015502.3	Gene:	Ppr-Y / 3355180	FlyBaseID:	FBgn0046697	Length:	569	Species:	Drosophila melanogaster
Sequence 2:	NP_495653.1	Gene:	sds-22 / 174266	WormBaseID:	WBGene00011637	Length:	326	Species:	Caenorhabditis elegans

Alignment Length:	260	Identity:	79/260 - (30%)
Similarity:	125/260 - (48%)	Gaps:	40/260 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly    14 PLVDEV-----IYPDIEPGIINRSLIESSYLKHVHRGEGRRLHQLEPVVLEQILTMRLEFNNILR 73
            |.::|:     :...|.|.|  .||:..:.| .::..:...:..||.:|  .::::.|.:|.|.:
Worm    58 PKIEELRMRNNLLVSISPTI--SSLVTLTSL-DLYENQLTEISHLESLV--NLVSLDLSYNRIRQ 117

  Fly    74 IDHLWILPNLTKLCLNCNKIETIENIEMLTNLKDLNLSFNFIEKIENLDTLVNLEVLSLFSNKIE 138
            |:.|..|..|..|.|..||||.|||:|.||.||.|.|..|.|:||||:..||||:.|.:..|||.
Worm   118 INGLDKLTKLETLYLVSNKIEKIENLEALTQLKLLELGDNRIKKIENIGHLVNLDELFIGKNKIR 182

  Fly   139 AIENIDMLTMLVIISLGNNLIDTVEGIERFRFMNNLKIINLEGNPIAKRTNFCLLKYISAILPKL 203
            .:|.::.|..|.::||..|.|..:|.:|:   :||||.:.|....         |:.|..:.|..
Worm   183 QLEGVETLQKLSVLSLPGNRIVKIENVEQ---LNNLKELYLSDQG---------LQDIHGVEPLT 235

  Fly   204 NYYEYTFIKSEL-------RAEACNLYYREIREIEDKQEKEIQARKFLEREQ-SEAKRLASSFVE 260
            |........:|:       |.|:.|.::....::|          .|.|.|| |:.|.|.:.::|
Worm   236 NLLLLDVANNEIKTFSGVERLESLNDFWANDNKVE----------SFSEIEQLSKLKGLQTVYLE 290

Fly 261 260
Worm 291 290

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.