DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ppr-Y and C06A8.6

DIOPT Version :9

Sequence 1:NP_001015502.3 Gene:Ppr-Y / 3355180 FlyBaseID:FBgn0046697 Length:569 Species:Drosophila melanogaster
Sequence 2:NP_495634.1 Gene:C06A8.6 / 174253 WormBaseID:WBGene00015516 Length:349 Species:Caenorhabditis elegans


Alignment Length:315 Identity:89/315 - (28%)
Similarity:135/315 - (42%) Gaps:34/315 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 EVQKPLV--DEVIYPDIEPGIIN--------RSLIESSYLKHVHRGEGR--RLHQLEPVVLEQIL 62
            |.:|.:|  :::.|.:|.....|        :.:.:.|:|.||.....|  .:.::|.:.....|
 Worm    14 EFEKIVVEPEDIEYVEIPADAKNVDLTRHRIKEIGDYSWLTHVEHFSFRWNLIKKIENLDCLTTL 78

  Fly    63 TMRLEF--NNILRIDHLWILPNLTKLCLNCNKIETIENIEMLTNLKDLNLSFNFIEKIENLDTLV 125
            | .|||  |.|.::::|..|.||..|.|:.|:|..|||:|.||.||.|....|.|.|||.||||.
 Worm    79 T-HLEFYDNQITKVENLDSLVNLESLDLSFNRITKIENLEKLTKLKTLFFVHNKITKIEGLDTLT 142

  Fly   126 NLEVLSLFSNKIEAIENIDMLTMLVIISLGNNLIDTVEGIERFRFMNNLKIINLEGNPIAKRTNF 190
            .||.|.|..|:|..|||:|....|..:.||.|.|..:|.::.   :..|.:::|..|.|....|.
 Worm   143 ELEYLELGDNRIAKIENLDNNLKLDRLFLGANQIRLIENVDH---LKKLTVLSLPANAITVVDNI 204

  Fly   191 CLLKYISAILPKLNYYEYTF-IKSELRAEACNLYYREIREIEDKQEKEIQARKFLEREQSEAKRL 254
            ..|..:..|....|..:|.. |...|..|..:.....:.::|:     |...|.|....:...: 
 Worm   205 SGLHNLKEIYLAQNGIKYVCGIDEHLPLEILDFNQNRLEKVEN-----IHQLKTLTDFWARGNK- 263

  Fly   255 ASSFVEHLDGHQLFDSLWRGDEDGRVLMLVGTQAQELADEYDKDIFELTQEIYKL 309
                   ||...:.|.|....:...|.:.....|.  .|.|...:..|.|:|.:|
 Worm   264 -------LDNWSIMDELVELPQLNSVYLDFNPIAS--VDTYRGKVIHLLQQITRL 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ppr-YNP_001015502.3 leucine-rich repeat 63..82 CDD:275378 8/20 (40%)
LRR_8 81..137 CDD:290566 29/55 (53%)
LRR_4 81..121 CDD:289563 20/39 (51%)
leucine-rich repeat 83..104 CDD:275378 10/20 (50%)
LRR_4 103..143 CDD:289563 21/39 (54%)
leucine-rich repeat 105..126 CDD:275378 12/20 (60%)
LRR_8 126..184 CDD:290566 19/57 (33%)
LRR_4 126..166 CDD:289563 16/39 (41%)
leucine-rich repeat 127..148 CDD:275378 10/20 (50%)
leucine-rich repeat 149..162 CDD:275378 5/12 (42%)
C06A8.6NP_495634.1 internalin_A 2..>279 CDD:380193 81/281 (29%)
leucine-rich repeat 35..55 CDD:275380 3/19 (16%)
leucine-rich repeat 56..77 CDD:275380 3/20 (15%)
leucine-rich repeat 78..99 CDD:275380 9/21 (43%)
leucine-rich repeat 100..121 CDD:275380 10/20 (50%)
leucine-rich repeat 122..143 CDD:275380 12/20 (60%)
leucine-rich repeat 144..165 CDD:275380 10/20 (50%)
leucine-rich repeat 166..187 CDD:275380 6/23 (26%)
leucine-rich repeat 188..209 CDD:275380 6/20 (30%)
leucine-rich repeat 210..230 CDD:275380 4/19 (21%)
leucine-rich repeat 232..278 CDD:275380 9/58 (16%)
LRRcap 293..310 CDD:197729 6/17 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158749
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.