DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pp1-Y2 and gsp-4

DIOPT Version :9

Sequence 1:NP_001015497.4 Gene:Pp1-Y2 / 3355173 FlyBaseID:FBgn0046698 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_001379823.1 Gene:gsp-4 / 171960 WormBaseID:WBGene00020187 Length:305 Species:Caenorhabditis elegans


Alignment Length:306 Identity:157/306 - (51%)
Similarity:217/306 - (70%) Gaps:7/306 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LTELNNIDQLILRIIDT----RRLKQLNLTETDIRLLCNRSREVFMSQPMLLELSAPVKICGDIH 68
            :|...::|.|:.|:::.    .|| ..::.|.:::..|..::.||.||..|||:..|:.:|||||
 Worm     1 MTATIDVDNLMSRLLNVGMSGGRL-TTSVNEQELQTCCAVAKSVFASQASLLEVEPPIIVCGDIH 64

  Fly    69 GQFTDLLRLFDYGGYPPASNYLFLGDYVDRGKQSIETMCLLLAYKIKYPENFFLLRGNHESAGIN 133
            ||::||||:||..|:||..|:||||||||||:|:|||:||:..:|||||||||:||||||...||
 Worm    65 GQYSDLLRIFDKNGFPPDINFLFLGDYVDRGRQNIETICLMFCFKIKYPENFFMLRGNHECPAIN 129

  Fly   134 RIYGFYDECKRRY-TIKLWRTFVDCYSCMPVSAIVDEKIFCCHGGLSPDLLNMNQIGQLARPCDV 197
            |:||||:||.||| :.:||..|.|.::.||:..::..:|.|.||||||.|..::|:.||.||.|.
 Worm   130 RVYGFYEECNRRYKSTRLWSIFQDTFNWMPLCGLIGSRILCMHGGLSPHLQTLDQLRQLPRPQDP 194

  Fly   198 PDKGLLCDLLWSDPDPKIMGWSDNDRGVSVTFGADIVGKFVHRHKFDLICRAHQVVEDGYEFFAK 262
            |:..:..||||:|||..:.||..|.||||..||.|:|.....|...||:.||||||:|||||||.
 Worm   195 PNPSIGIDLLWADPDQWVKGWQANTRGVSYVFGQDVVADVCSRLDIDLVARAHQVVQDGYEFFAS 259

  Fly   263 RQLITIFSAPNYCGEFDNAGAMMSVDETLMCSFYVLKPSKKPGLRK 308
            ::::||||||:|||:|||:.|.|.|||.::|:|.:.||:.| .|||
 Worm   260 KKMVTIFSAPHYCGQFDNSAATMKVDENMVCTFVMYKPTPK-SLRK 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pp1-Y2NP_001015497.4 PTZ00480 10..303 CDD:185658 152/297 (51%)
MPP_PP1_PPKL 13..300 CDD:277359 150/291 (52%)
gsp-4NP_001379823.1 MPP_superfamily 6..297 CDD:417454 150/291 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S19
OMA 1 1.010 - - QHG53795
OrthoDB 1 1.010 - - D327461at33208
OrthoFinder 1 1.000 - - FOG0000018
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.880

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