DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG40486 and Rdh8

DIOPT Version :9

Sequence 1:NP_001036311.2 Gene:CG40486 / 3355162 FlyBaseID:FBgn0263830 Length:247 Species:Drosophila melanogaster
Sequence 2:NP_001025461.1 Gene:Rdh8 / 235033 MGIID:2685028 Length:317 Species:Mus musculus


Alignment Length:257 Identity:68/257 - (26%)
Similarity:103/257 - (40%) Gaps:47/257 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RVAVVTGASSGIGAAVARHLV---SAGVIVVGLARRVDRMKAIKEQLPPELQGRLHAIHCDVEDL 68
            |..:::|.|||||..:|..|.   .....||...|.:.:.:.::......|...|..:..||.:.
Mouse     6 RTVLISGCSSGIGLELALQLAHDPRQRYQVVATMRDLGKKEPLEAAAGEALGKTLSVVQLDVCND 70

  Fly    69 DSVTAAFDWIEEQLGGCDILVNNAGCLNPGQLLTLELEQLQQVLNVNLMGVVICTRRAFRSMQQR 133
            :|||.....||.  |..|:||||||....|.|..|.|..:|.|.|.|..|.|...:.....|::|
Mouse    71 ESVTDCLSHIEG--GQVDVLVNNAGVGLVGPLEGLSLATMQSVFNTNFFGAVRLVKAVLPGMKRR 133

  Fly   134 EVDGHVILINSLTGRNIINPPGDELQVL---NMYPLTKHGVTAMLEVLRQELRGFKTKIKVTSIT 195
            . .||:::::|:.|          ||.:   ::|..:|..:....|.|..:||.|...|.:....
Mouse   134 R-QGHIVVVSSVMG----------LQGVMFNDVYAASKFALEGFFESLAIQLRQFNIFISMVEPG 187

  Fly   196 PGVTDTE--------------------------ILPSGYGILPML--KPDDIAAGIMYVLGT 229
            |..||.|                          .||:...:...:  .|.|:|..|..|:||
Mouse   188 PVTTDFEGKLLAQVSKAEFPDTDPDTLGYFRDLYLPASRELFRSVGQSPRDVAQVIAKVIGT 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG40486NP_001036311.2 YdfG 1..247 CDD:226674 68/257 (26%)
NADB_Rossmann 1..242 CDD:304358 68/257 (26%)
Rdh8NP_001025461.1 NADB_Rossmann 6..263 CDD:304358 68/257 (26%)
adh_short 6..201 CDD:278532 59/207 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1205
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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