DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42346 and 2mit

DIOPT Version :9

Sequence 1:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster
Sequence 2:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster


Alignment Length:1185 Identity:254/1185 - (21%)
Similarity:440/1185 - (37%) Gaps:275/1185 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   683 QKNSIEDIEPQAFHTLENMQHINLQD-NQLTVLEDIFPDE-------NSSLLSVQLEANYLHKVH 739
            |:.|.:|:...::.::..|    |:| |:    .|.|..|       :...|.:...||.|:..|
  Fly    47 QQLSRQDVGRLSYQSIHRM----LRDENE----PDSFRGELRYQQKRHKRELELNAPANKLNLTH 103

  Fly   740 P--RTFSRQ--------QKVQIMWLKDNQLTRVERSFFADTPQLGRLYLSDNKIRDIE---KDTF 791
            .  |||:..        |.:..|.|..|||..:....|   .||.:|.|.:|.:..|.   .||.
  Fly   104 RDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNF---NQLRQLDLGNNSLEVIPLSLADTN 165

  Fly   792 VNLLLLQFLDLSGNQLRQLRRDYFAPLQDLEELSLARNHIEAIEGYAFAKLKNLKSLDLSHNPLV 856
            ::|..:. ||||.|:..|:...:||                       .:|..||:|:|:||.|:
  Fly   166 MSLPFVT-LDLSCNKFSQISTSFFA-----------------------QRLPQLKNLNLAHNELL 206

  Fly   857 QLTRDIFSNEFPLNSLNLGNCSLRKLEQHAFKSLTNLNELNLERNQLNPADIQTLD-IPNLRRLL 920
            .::|:.|.|...|.:|.|.:.::..::...|.:|.||..|:|..|:|:.:.|:.|. ||:|..|.
  Fly   207 NISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSHNRLSGSAIRALQGIPDLVSLS 271

  Fly   921 LSHNNFSYAGSVGIMAGMLDRLRSLQQLSMSNCSLGQIPDLLFAKNTNLVR-LDLCDNRLTQINR 984
            :::|     ..||:.........||::|..|...|.|:|..|    ...|| |.|.||.|..||.
  Fly   272 IAYN-----PDVGVAMQEFVASWSLKELDASGTGLCQVPAAL----AQSVRTLKLSDNWLKAINC 327

  Fly   985 NIFSGLNVFKELRLCRNELSDFPHIALYNLSTLESLDLARNQLASIDFFKLSGTL--NLRQLILR 1047
            .......:.:.|.|..:.::.....||..|..||||.|.||.|     .::..:|  :|..|.|:
  Fly   328 GDMDSYPLLQYLDLSHSRIAQVEDDALGRLELLESLFLDRNLL-----MRVPSSLPPSLEHLFLQ 387

  Fly  1048 DNKITALSGFNAVNLTQLDSVDLSGNLLLSLPANFLRHSINLQKVHLSNNRFLQIPSSALSDVS- 1111
            .|:|..|.....|.|..|.::|||.|.|:.||      .::|.|:     ..|.:.||.:..|| 
  Fly   388 HNQIMELPPQAFVGLVNLQTLDLSNNRLIFLP------PLSLPKL-----LTLNLESSGVESVSQ 441

  Fly  1112 -----IPRLSWLNLTGNPI--NRIYTVKEERYPYLKELYICQTNLSILTSKDFEAFQALQHLHLV 1169
                 :|:|..|.|..|||  :.:..:.|...| .:.:...|:|.:.::.:.....:.||..:..
  Fly   442 SIVHTLPQLRDLLLEDNPIKCSDLLGIAEWASP-CRSVDAGQSNGASVSGRVDLKTEYLQFHNFY 505

  Fly  1170 NNRITRISPGAFK----------SLT----NLLTLDLSVNELEMLPKERLQGLRLLRFLNISHNT 1220
            .|..:| ..|..|          |||    .|.|...|::::|...:.:.....    :.::..|
  Fly   506 ENFSSR-ECGIRKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQEAQATATS----VEVAAAT 565

  Fly  1221 LKDLEEFSVDLLE--MQTLDLSFNQLDRISKKTFRN------LHGLLELFLMGNRMTVLSNDAFR 1277
            ....|:..:....  ..|...:..:.:.|:..|..:      |.....:...||....|:....|
  Fly   566 AATSEKTGIQATSAAQSTAAATTAEREAIATATSSDTTATPTLAAAAAIQSAGNIPAQLTTKTLR 630

  Fly  1278 FLRKLHVLDLRKNYFELVPLEPLRPLETNLRTLRLEENPLHCSCDAQKLWEWL--RDHRKWSLSM 1340
            ......:..|::.  :.:|..|.:..||..:.|     |......|......|  ||....:..:
  Fly   631 PTETTSLAQLQRR--QQMPGMPAKTTETPAKNL-----PSLAQTKATTALPILATRDAATATTEI 688

  Fly  1341 GSGAGRGIGGLTGGLGGDSINYL---RCEHP-TELRGKVFGRMEPQQFCDAPLIPKMAIQDIQPY 1401
            .|.....|.|.|..:...:....   ..|.| |.|.||...:|...                :.:
  Fly   689 NSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGKKSDKMPAD----------------KAH 737

  Fly  1402 SVVVSWQSRDHLG--------------------LNGFEIVYH------ATGDGLVTAGSPTSRER 1440
            ..::.:.:||..|                    |.|..::.|      ...:.|:..|:.|..:.
  Fly   738 ETLLKYPTRDTSGQVATTPHKHATLQLHVKDRHLIGTPLLMHKGDVLLVDAEQLLLPGTATVADA 802

  Fly  1441 DSLRDIHDPERQRTRDQARERSRERDRDRERDRERFSIATDEIHGKRLNG-TASSTKLTKLSPNT 1504
            ||  ::.||.:|.               :..::|:...|||:.....:|| |.|..|..|..|: 
  Fly   803 DS--EVLDPSQQH---------------QSAEQEKHQSATDKRQADAINGDTKSPAKGHKKKPS- 849

  Fly  1505 RYHICVIGSGNWLSEPLANALQRLHTNESLREEEAVMMSAPLPESFSPYQHQHNR-NSNGNANPA 1568
                            |:.......|..:.:..|.:..::..|      ||||:. |:...|.|.
  Fly   850 ----------------LSIKKMTYSTKHAAKTVEDMAATSKTP------QHQHSSVNTPKEAAPE 892

  Fly  1569 MVQDHNKKQNPDQDLDNVVGQDNALMEVLKNSHISACTDVQTLDSTPSLVTDENGLSSNGFIHSI 1633
                                      |:...:.:.|..:::: :|.|..:.|:...:.    |::
  Fly   893 --------------------------ELSTFAQLKAYVELKS-ESKPEHLMDQREENH----HNL 926

  Fly  1634 LTRRLG--LIVGCCLGIIVFIVMISVLSYVKLKKKRIENAKRQAALPPEYISYRHFSIPNEELT- 1695
            .....|  |:|.|    ::|||:::.|::|...:...:.:.|...|.|.:  .||.:..::..: 
  Fly   927 TGNHPGVMLLVAC----VLFIVLLAGLAHVYRCELPWQRSNRSGQLRPHH--QRHLNETDDAHSF 985

  Fly  1696 -----RTAANAGTVAAAAAANNSHNSNNSTDEGSSP---------HMSSVPSGISAHISGTSLST 1746
                 ...:|.|.   .|.....|:|.......|||         .........|:.::..|.||
  Fly   986 LHYQGSVNSNGGD---PARLQKWHHSTRREAPYSSPLHNLQARELQQQRCQQFYSSSLADKSSST 1047

  Fly  1747 GGTGTGSTTTTATTP 1761
            ..:.:||:.::..:|
  Fly  1048 SSSSSGSSRSSLHSP 1062

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42346NP_001036303.2 leucine-rich repeat 303..325 CDD:275380
LRR_8 325..384 CDD:290566
leucine-rich repeat 327..350 CDD:275380
leucine-rich repeat 351..461 CDD:275380
LRR_8 373..433 CDD:290566
LRR_RI 397..648 CDD:238064
leucine-rich repeat 399..422 CDD:275380
leucine-rich repeat 462..485 CDD:275380
LRR_8 465..520 CDD:290566
leucine-rich repeat 486..509 CDD:275380
LRR_8 508..567 CDD:290566
leucine-rich repeat 510..533 CDD:275380
LRR_RI 527..785 CDD:238064 30/119 (25%)
leucine-rich repeat 534..556 CDD:275380
LRR_8 555..613 CDD:290566
leucine-rich repeat 557..580 CDD:275380
leucine-rich repeat 581..604 CDD:275380
LRR_8 604..663 CDD:290566
leucine-rich repeat 605..628 CDD:275380
leucine-rich repeat 629..652 CDD:275380
LRR_8 652..711 CDD:290566 7/28 (25%)
leucine-rich repeat 653..676 CDD:275380
leucine-rich repeat 677..700 CDD:275380 3/16 (19%)
leucine-rich repeat 701..748 CDD:275380 15/64 (23%)
leucine-rich repeat 725..736 CDD:275378 3/10 (30%)
leucine-rich repeat 749..772 CDD:275380 6/22 (27%)
LRR_8 771..831 CDD:290566 17/62 (27%)
leucine-rich repeat 773..793 CDD:275380 7/22 (32%)
LRR_RI 804..1076 CDD:238064 79/275 (29%)
LRR_8 821..903 CDD:290566 21/81 (26%)
leucine-rich repeat 821..844 CDD:275380 1/22 (5%)
leucine-rich repeat 845..868 CDD:275380 10/22 (45%)
leucine-rich repeat 869..892 CDD:275380 5/22 (23%)
leucine-rich repeat 893..915 CDD:275380 8/22 (36%)
leucine-rich repeat 916..944 CDD:275380 5/27 (19%)
leucine-rich repeat 945..968 CDD:275380 7/22 (32%)
LRR_8 967..1027 CDD:290566 21/60 (35%)
leucine-rich repeat 969..992 CDD:275380 9/23 (39%)
leucine-rich repeat 993..1014 CDD:275380 4/20 (20%)
LRR_8 1015..1075 CDD:290566 22/61 (36%)
leucine-rich repeat 1017..1040 CDD:275380 9/24 (38%)
leucine-rich repeat 1041..1064 CDD:275380 8/22 (36%)
LRR_RI <1047..1244 CDD:238064 47/220 (21%)
LRR_8 1063..1125 CDD:290566 20/67 (30%)
leucine-rich repeat 1089..1114 CDD:275380 7/30 (23%)
leucine-rich repeat 1115..1162 CDD:275380 10/48 (21%)
LRR_8 1163..1219 CDD:290566 13/69 (19%)
leucine-rich repeat 1163..1186 CDD:275380 9/36 (25%)
leucine-rich repeat 1187..1210 CDD:275380 4/22 (18%)
leucine-rich repeat 1211..1233 CDD:275380 2/21 (10%)
leucine-rich repeat 1234..1257 CDD:275380 4/28 (14%)
LRR_8 1235..1292 CDD:290566 9/62 (15%)
leucine-rich repeat 1258..1279 CDD:275380 4/20 (20%)
leucine-rich repeat 1282..1306 CDD:275380 4/23 (17%)
2mitNP_001262529.1 LRR_RI 124..355 CDD:238064 74/266 (28%)
leucine-rich repeat 124..143 CDD:275380 6/21 (29%)
leucine-rich repeat 144..167 CDD:275380 7/22 (32%)
leucine-rich repeat 172..194 CDD:275380 9/45 (20%)
LRR_8 193..253 CDD:290566 20/59 (34%)
leucine-rich repeat 195..218 CDD:275380 10/22 (45%)
leucine-rich repeat 219..242 CDD:275380 5/22 (23%)
LRR_8 241..301 CDD:290566 19/64 (30%)
leucine-rich repeat 243..311 CDD:275380 22/76 (29%)
leucine-rich repeat 312..335 CDD:275380 9/22 (41%)
LRR_8 334..415 CDD:290566 27/85 (32%)
leucine-rich repeat 336..359 CDD:275380 5/22 (23%)
leucine-rich repeat 360..380 CDD:275380 9/24 (38%)
LRR_8 379..460 CDD:290566 28/91 (31%)
LRR_4 379..>415 CDD:289563 13/35 (37%)
leucine-rich repeat 381..404 CDD:275380 8/22 (36%)
leucine-rich repeat 405..449 CDD:275380 15/54 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453520
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45617
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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