DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42346 and CG6749

DIOPT Version :10

Sequence 1:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster
Sequence 2:NP_648354.1 Gene:CG6749 / 39144 FlyBaseID:FBgn0036040 Length:552 Species:Drosophila melanogaster


Alignment Length:614 Identity:159/614 - (25%)
Similarity:236/614 - (38%) Gaps:160/614 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   794 LLLLQFLDLSGNQL------RQLRRDYFAPLQDLEELSLARNHIEAIEGYAFAKLKNLKSLDLSH 852
            ||.:.|..|.|..|      |..:....|.||||.:|.....|..||..                
  Fly    15 LLCMGFPILHGADLCQPIGWRNFQCSEVASLQDLVDLGAENWHTLAIRN---------------- 63

  Fly   853 NPLVQLTRDIFSNEFPLNSLNLGNCSLRKLEQHAFKSLTNLNELNLERNQLNPADIQTLDIPNLR 917
               ||...::.|.|   |:.:|.|.                  |:|:.....|.::.|       
  Fly    64 ---VQTELEVGSGE---NADHLANL------------------LDLDLTGAAPINVHT------- 97

  Fly   918 RLLLSHNNFSYAGSVGIMAGMLDRLRSLQQLSMSNCSLGQIPDLLFAKNTNLVRLDLCDNRLTQI 982
                  |.||.             |.:|:||::|.|.|..|....||..:.|.|:|...|::..:
  Fly    98 ------NGFSI-------------LPNLRQLNLSGCGLVDIRGNHFAPESALQRIDFSHNQMELL 143

  Fly   983 NRNIFSGLNVFKELRLCRNELS--DFPHIALYNLSTLESLDLARNQLASIDFFKLSGTL-NLRQL 1044
            :|:.|..|..........|.|.  |.||:.|.|     .|:|..|:|.:..|    |.. .|::|
  Fly   144 DRDFFGNLRKLIYANFSHNALKQCDLPHMPLLN-----RLELGHNRLVNATF----GVCPQLQEL 199

  Fly  1045 ILRDNKITALSGFNAV-NLTQLDSVDLSGNLLLSLPANFLRHSINLQKVHLSNNRFLQIPSSALS 1108
            ||.||::..|. .||. .|..|..:.||||.|.|:.....:....|:|::||.|....:..:...
  Fly   200 ILNDNQLIQLD-VNAFRGLHGLLELQLSGNRLSSIGLETFQPLAQLRKLNLSQNALDALRPNVFG 263

  Fly  1109 DVS--IPRLSWLNLTGNPINRIYTVKEERYPYLKELYICQTNLSILTSKDFEAFQALQHLHLVNN 1171
            .|.  :..|..|:|:||.|..::..:......|:.|.:.:.:::.|:...|....:|:.|:|..|
  Fly   264 AVQNFVLHLQQLDLSGNRIRLLFDNQFRVLARLQMLDVSRNSIASLSPAHFVGLGSLRKLYLQYN 328

  Fly  1172 RITRISPGAFKSLTNLLTLDLSVNELEM----------LPKER---LQGLRL------------- 1210
            .|..|.|..|.:|.||.|||||.|.||.          ||:.|   |.|.|:             
  Fly   329 AILEIKPATFAALLNLDTLDLSYNNLEFLEEQIFGGNTLPRMRRLNLNGNRMKHLHPLAFSSLPF 393

  Fly  1211 LRFLNISHNTLKDLE-EFSVDLLEMQTLDLSFNQLDRISKKTFRNLHGLLELFLMGNRMTVLSND 1274
            |.:|.:.||.||.|: .....:..:|.|.|..|.|:.|:.....:|..:.|:.:..||:|     
  Fly   394 LEYLKLGHNELKSLDVRMFAPMRRLQKLHLGHNLLEEINLDVLESLSSVQEILVDNNRLT----- 453

  Fly  1275 AFRFLRKLHVLDLRKNYFELVPLEPLRPLETNLRTLRLEENPLHCSCDAQKLWEWLRDHRKWSLS 1339
               ||.|::|         ..|         ||:.:.:|.||..|.|.. ||..||         
  Fly   454 ---FLAKVNV---------SFP---------NLKRVAIEGNPWQCPCFV-KLQHWL--------- 487

  Fly  1340 MGSGAGRGIGGLTGGLGGDSINYLRCEHP 1368
                |.|.:..|.     |:..|.:.|.|
  Fly   488 ----ATRDVVYLR-----DNTGYYKGERP 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42346NP_001036303.2 LRR <301..606 CDD:443914
leucine-rich repeat 303..325 CDD:275380
leucine-rich repeat 327..350 CDD:275380
leucine-rich repeat 351..461 CDD:275380
leucine-rich repeat 399..422 CDD:275380
leucine-rich repeat 462..485 CDD:275380
LRR 486..>736 CDD:443914
leucine-rich repeat 486..509 CDD:275380
leucine-rich repeat 510..533 CDD:275380
leucine-rich repeat 534..556 CDD:275380
leucine-rich repeat 557..580 CDD:275380
leucine-rich repeat 581..604 CDD:275380
leucine-rich repeat 605..628 CDD:275380
PPP1R42 627..860 CDD:455733 18/71 (25%)
leucine-rich repeat 629..652 CDD:275380
leucine-rich repeat 653..676 CDD:275380
leucine-rich repeat 677..700 CDD:275380
leucine-rich repeat 701..748 CDD:275380
leucine-rich repeat 725..736 CDD:275378
leucine-rich repeat 749..772 CDD:275380
leucine-rich repeat 773..793 CDD:275380
leucine-rich repeat 821..844 CDD:275380 5/22 (23%)
leucine-rich repeat 845..868 CDD:275380 4/22 (18%)
LRR 869..1226 CDD:443914 105/389 (27%)
leucine-rich repeat 869..892 CDD:275380 3/22 (14%)
leucine-rich repeat 893..915 CDD:275380 4/21 (19%)
leucine-rich repeat 916..944 CDD:275380 4/27 (15%)
leucine-rich repeat 945..968 CDD:275380 9/22 (41%)
leucine-rich repeat 969..992 CDD:275380 7/22 (32%)
leucine-rich repeat 993..1014 CDD:275380 6/22 (27%)
leucine-rich repeat 1017..1040 CDD:275380 6/23 (26%)
leucine-rich repeat 1041..1064 CDD:275380 10/23 (43%)
leucine-rich repeat 1089..1114 CDD:275380 6/26 (23%)
leucine-rich repeat 1115..1162 CDD:275380 10/46 (22%)
PPP1R42 1155..1317 CDD:455733 53/188 (28%)
leucine-rich repeat 1163..1186 CDD:275380 9/22 (41%)
leucine-rich repeat 1187..1210 CDD:275380 14/35 (40%)
leucine-rich repeat 1211..1233 CDD:275380 7/22 (32%)
leucine-rich repeat 1234..1257 CDD:275380 7/22 (32%)
leucine-rich repeat 1258..1279 CDD:275380 4/20 (20%)
leucine-rich repeat 1282..1306 CDD:275380 2/23 (9%)
CG6749NP_648354.1 LRR_8 104..164 CDD:404697 17/59 (29%)
leucine-rich repeat 106..129 CDD:275380 9/22 (41%)
leucine-rich repeat 130..153 CDD:275380 7/22 (32%)
leucine-rich repeat 154..195 CDD:275380 13/49 (27%)
leucine-rich repeat 196..219 CDD:275380 10/23 (43%)
LRR 199..>452 CDD:443914 73/253 (29%)
leucine-rich repeat 220..243 CDD:275380 7/22 (32%)
leucine-rich repeat 244..267 CDD:275380 6/22 (27%)
leucine-rich repeat 272..295 CDD:275380 6/22 (27%)
leucine-rich repeat 296..319 CDD:275380 4/22 (18%)
leucine-rich repeat 320..343 CDD:275380 9/22 (41%)
leucine-rich repeat 344..369 CDD:275380 10/24 (42%)
leucine-rich repeat 370..393 CDD:275380 4/22 (18%)
leucine-rich repeat 394..417 CDD:275380 7/22 (32%)
leucine-rich repeat 418..441 CDD:275380 7/22 (32%)
Blue background indicates that the domain is not in the aligned region.

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