DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42346 and ltl

DIOPT Version :9

Sequence 1:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster
Sequence 2:NP_001261524.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster


Alignment Length:876 Identity:193/876 - (22%)
Similarity:310/876 - (35%) Gaps:241/876 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   823 ELSLARNHIE----------AIEGYAFAKLKNLKSLDL--SHNPLVQLTRDIFSN-EFPLNSLNL 874
            |...|.||:|          |:......||....::||  :|:.|..|....|:: .|.|..|.:
  Fly    28 ETGKAWNHVELSCEKLESFNAVVDSLANKLNADTNIDLKITHSQLDDLEMRSFTDMNFNLYKLRM 92

  Fly   875 GNCSLRKLEQHAFKSLTNLNELNLERNQLNPADIQTLDIPNLRRLLLSHNNFSYAGSVGIMAGML 939
            ...||:.|.:..|:.|:|:..|::..|.|:       :||   :..|||                
  Fly    93 QWNSLKSLPEVPFRGLSNVTYLSIGDNDLD-------EIP---KHALSH---------------- 131

  Fly   940 DRLRSLQQLSMSNCSLGQIPDLLFAKNTNLVRLDLCDNRLTQINRNIF-SGLNVFKELRLCRNEL 1003
              :.||..|.:..|.:..:....|.....:..|.|..|.:|:::|..| ..|.:   |.|.||:|
  Fly   132 --MPSLLTLDIGRCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFPKSLLI---LHLGRNQL 191

  Fly  1004 SDFPHIALYNLSTLESLDLARNQLASIDFFKLSGTLNLRQLILRDNKITALSGFNAVNLTQLDSV 1068
            ... :.:|::|..||||.:..|.:.|:| .:|.....||.|:..:|::..|.. |...:..|::|
  Fly   192 ESL-NGSLHDLHNLESLFINANNITSLD-DELPDGGQLRLLMAHNNRLERLPA-NMAGMHSLETV 253

  Fly  1069 DLSGNLLLSLPANFLRHSINLQKVHLSNNRFLQIPSSALSDVSIPRLSWLNLTGNPINRIYTVKE 1133
            .:..|.|.|.. ..||:::||.:|...||....:.....:..|  ::..|.:   ..|.|.::..
  Fly   254 HIHCNQLRSFD-RVLRNAVNLSEVMADNNELEYLAQDEFASCS--KVETLQM---GCNHIKSLNS 312

  Fly  1134 ERYPYLKELYICQTNLSILTSKDFEAF--------QALQHLHLVNNRITRI--SPGAFKSLTNLL 1188
            ...|.||   :...|.|.   .|.|.|        ::|:.|.|.:|||.|:  .|...:.|. |:
  Fly   313 SLLPILK---LKNANFSF---NDIEEFSMAELHGLRSLKTLQLSSNRIQRLLPDPRGVQELM-LV 370

  Fly  1189 TLDLSVNELEMLPKERLQGLRLLRFLNISHNTLKDLEEFSVD-LLEMQTLDLSFNQLDRISKKTF 1252
            .|||..|.::.| ...|.||..||.||::.|.|:.|:....| ::.:..|||:.|||..:.....
  Fly   371 NLDLDNNRIDSL-NGALAGLGNLRILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKPLEM 434

  Fly  1253 RNLHGLLELFLMGNRMTVLSNDAFRFLRKLHVLDLRKNYFELVPLEPLRPLETNLR--------- 1308
            ..|..|..|.:..|.:|.|..| |:.|..|...:|..|....:..|    |.||.|         
  Fly   435 TLLPSLKILKVAYNNITKLEQD-FKGLPVLCQANLTNNQISTISSE----LVTNTRCKNHNVPGK 494

  Fly  1309 -TLRLEENPLHCSCDAQKLWEWLRDHRKWSLSMGSGAGRG------------------------- 1347
             .:.|::||:.|.....:|.      |..::......||.                         
  Fly   495 LEIHLDDNPIMCDVGLNELC------RLMAVQEARIRGRSQCFENDQEVCTVLPMLYNVNLPIMV 553

  Fly  1348 -----------------------------IGGLTGGLGG------DSIN-----------YLRCE 1366
                                         :..|...||.      |.:|           .....
  Fly   554 TNLKLTGREVPKPMVRVIVPSLIKANNELLPPLIATLGNPVLISTDLVNPVISPLPPPLLLATTT 618

  Fly  1367 HPTELRGKVFGRMEPQQFCDAPLIPKMAIQD-------------------IQPYSVVVSWQSRDH 1412
            .|..|...|...:|..:...|..:|....|:                   :.|..::.:      
  Fly   619 PPPPLPLPVESEVEKNESTTANPVPTNYTQETTTTTSTTTTTTTTETSSQVAPIEIITT------ 677

  Fly  1413 LGLNGFEIVYHATGDGLVTAGSPTSRERDSLR---DIHDPERQRT-----------------RDQ 1457
                        |.....|..:.|.:..::|.   ::.||....|                 :|.
  Fly   678 ------------TAPTTTTTSTTTPKPNETLPVIVELQDPNPPDTTVNQTALVPPVVLDPLQQDL 730

  Fly  1458 ARERSRERDRDRERDRERFSIATDEIHGKRLNGTASSTKLTKLSPNTRYHICVIGSGNWLSEP-L 1521
            .|||.|||:|:.|||.:..::|..|.            :..:..||....  .:||......| .
  Fly   731 ERERERERERELERDLDHEAVAKTEY------------ETVEYIPNLVQP--PVGSDALTPPPSK 781

  Fly  1522 ANALQR----LHTNESLREEEAVMMSAPLPE 1548
            ||||:.    :|:|....|......|..:||
  Fly   782 ANALEEDSESVHSNSVHAEYPHAAQSLQIPE 812

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42346NP_001036303.2 leucine-rich repeat 303..325 CDD:275380
LRR_8 325..384 CDD:290566
leucine-rich repeat 327..350 CDD:275380
leucine-rich repeat 351..461 CDD:275380
LRR_8 373..433 CDD:290566
LRR_RI 397..648 CDD:238064
leucine-rich repeat 399..422 CDD:275380
leucine-rich repeat 462..485 CDD:275380
LRR_8 465..520 CDD:290566
leucine-rich repeat 486..509 CDD:275380
LRR_8 508..567 CDD:290566
leucine-rich repeat 510..533 CDD:275380
LRR_RI 527..785 CDD:238064
leucine-rich repeat 534..556 CDD:275380
LRR_8 555..613 CDD:290566
leucine-rich repeat 557..580 CDD:275380
leucine-rich repeat 581..604 CDD:275380
LRR_8 604..663 CDD:290566
leucine-rich repeat 605..628 CDD:275380
leucine-rich repeat 629..652 CDD:275380
LRR_8 652..711 CDD:290566
leucine-rich repeat 653..676 CDD:275380
leucine-rich repeat 677..700 CDD:275380
leucine-rich repeat 701..748 CDD:275380
leucine-rich repeat 725..736 CDD:275378
leucine-rich repeat 749..772 CDD:275380
LRR_8 771..831 CDD:290566 3/7 (43%)
leucine-rich repeat 773..793 CDD:275380
LRR_RI 804..1076 CDD:238064 67/266 (25%)
LRR_8 821..903 CDD:290566 25/92 (27%)
leucine-rich repeat 821..844 CDD:275380 8/30 (27%)
leucine-rich repeat 845..868 CDD:275380 6/25 (24%)
leucine-rich repeat 869..892 CDD:275380 7/22 (32%)
leucine-rich repeat 893..915 CDD:275380 4/21 (19%)
leucine-rich repeat 916..944 CDD:275380 3/27 (11%)
leucine-rich repeat 945..968 CDD:275380 4/22 (18%)
LRR_8 967..1027 CDD:290566 19/60 (32%)
leucine-rich repeat 969..992 CDD:275380 7/23 (30%)
leucine-rich repeat 993..1014 CDD:275380 6/20 (30%)
LRR_8 1015..1075 CDD:290566 17/59 (29%)
leucine-rich repeat 1017..1040 CDD:275380 8/22 (36%)
leucine-rich repeat 1041..1064 CDD:275380 6/22 (27%)
LRR_RI <1047..1244 CDD:238064 57/207 (28%)
LRR_8 1063..1125 CDD:290566 14/61 (23%)
leucine-rich repeat 1089..1114 CDD:275380 5/24 (21%)
leucine-rich repeat 1115..1162 CDD:275380 11/54 (20%)
LRR_8 1163..1219 CDD:290566 22/57 (39%)
leucine-rich repeat 1163..1186 CDD:275380 9/24 (38%)
leucine-rich repeat 1187..1210 CDD:275380 9/22 (41%)
leucine-rich repeat 1211..1233 CDD:275380 8/22 (36%)
leucine-rich repeat 1234..1257 CDD:275380 7/22 (32%)
LRR_8 1235..1292 CDD:290566 18/56 (32%)
leucine-rich repeat 1258..1279 CDD:275380 7/20 (35%)
leucine-rich repeat 1282..1306 CDD:275380 5/23 (22%)
ltlNP_001261524.1 leucine-rich repeat 65..86 CDD:275380 5/20 (25%)
LRR_8 86..145 CDD:290566 20/86 (23%)
leucine-rich repeat 87..110 CDD:275380 7/22 (32%)
leucine-rich repeat 111..134 CDD:275380 8/50 (16%)
leucine-rich repeat 135..158 CDD:275380 4/22 (18%)
LRR_8 158..214 CDD:290566 19/59 (32%)
leucine-rich repeat 159..180 CDD:275380 6/20 (30%)
leucine-rich repeat 181..203 CDD:275380 8/25 (32%)
leucine-rich repeat 204..226 CDD:275380 8/22 (36%)
LRR_RI 226..451 CDD:238064 66/239 (28%)
leucine-rich repeat 227..249 CDD:275380 6/22 (27%)
leucine-rich repeat 250..272 CDD:275380 7/22 (32%)
leucine-rich repeat 273..296 CDD:275380 5/24 (21%)
leucine-rich repeat 297..315 CDD:275380 3/20 (15%)
LRR_8 319..402 CDD:290566 29/90 (32%)
leucine-rich repeat 320..335 CDD:275378 5/17 (29%)
leucine-rich repeat 344..366 CDD:275380 8/21 (38%)
leucine-rich repeat 367..391 CDD:275380 10/25 (40%)
LRR_8 369..426 CDD:290566 21/57 (37%)
leucine-rich repeat 392..415 CDD:275380 8/22 (36%)
leucine-rich repeat 416..439 CDD:275380 7/22 (32%)
LRR_8 438..>479 CDD:290566 11/41 (27%)
leucine-rich repeat 440..462 CDD:275380 8/22 (36%)
leucine-rich repeat 463..483 CDD:275380 5/23 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453709
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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