DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42346 and Lrt

DIOPT Version :9

Sequence 1:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster
Sequence 2:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster


Alignment Length:886 Identity:193/886 - (21%)
Similarity:321/886 - (36%) Gaps:238/886 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   912 DIPNLRRLLLSHNNFSYAGSVGIMAGMLDRLR-SLQQLSMSNCSLGQIPDLLFAK---NTNLVRL 972
            |:|:..|.     |....|    |..:.|||| |...:|:.:|||..:..|..||   |.:|..|
  Fly   148 DLPHTLRC-----NIDLHG----MMLLADRLRTSPYSISLLDCSLRNVTFLSDAKIFDNVSLHGL 203

  Fly   973 DLCDNRLTQINRNIFSGL-NVFKELRLCRNELSDFPHIALYNLSTLESLDLARNQLASIDFFKLS 1036
            .:....:.:::::.|.|: ...:.|.|..|.|...|..||..||.||.||||.|::.::......
  Fly   204 VISSGEIKRVHKSAFLGIRGPLQALGLPGNALMSVPWNALSTLSALERLDLANNKIKALGTADFV 268

  Fly  1037 GTLNLRQLILRDNKITALSGFNAVNLTQLDSVDLSGNLL--LSLPANFLRHSINLQKVHLSNNRF 1099
            |..:|..|.|.:|:|:::|....|||.:|:.:.|.||.|  .:.....|...::|:::.|..|..
  Fly   269 GLTSLVYLELSNNQISSISQRTFVNLRKLEVLKLGGNRLGDYAQSLRSLSQCLSLRQLDLQANNL 333

  Fly  1100 LQIPSSALSDVSIP---RLSWLNLTGNPINRIYTVKEERYPYLKELYICQTNLSILTSKDFEAFQ 1161
                :..||:.::|   .|..|||..|.|..|                        .:|....|.
  Fly   334 ----NGPLSEQTLPGMRNLESLNLNRNLIKSI------------------------QNKALANFS 370

  Fly  1162 ALQHLHLVNNRITRISPGAFKSLTNLLTLDLSVNELEMLPKERLQGLRLLRFLNISHNTLKDLEE 1226
            .|..|.|.:|:|..:...||..|..|.:||||.|.:..:....||.|..|..|:::||.|:.|  
  Fly   371 RLVSLSLRHNQIDVLQDHAFFGLGALDSLDLSYNGIVAISSASLQHLSRLTVLDLTHNFLRAL-- 433

  Fly  1227 FSVDLLEMQTLDLSFNQLDRISKKTFRNLHGLLELFLMGNRMTVLSNDAFRFLRKLHVLDLRKNY 1291
                     |.||            ...|..|.||.|.||.:::::.:|                
  Fly   434 ---------TSDL------------IAPLPSLRELRLAGNDISIVARNA---------------- 461

  Fly  1292 FELVPLEPLRPLETNLRTLRLEENPLHCSCDAQKLWEWLRD---HRKWSLSMGSGAGRGIGGLTG 1353
                 ::..|.||    :|:::||||.|.|..:...|||::   |...|.|              
  Fly   462 -----MDGARELE----SLQMQENPLSCDCSIRPFAEWLQESQLHSSLSAS-------------- 503

  Fly  1354 GLGGDSINYLRCEHPTELRGKVFGRMEPQQF-CDAPLIPKMAIQDIQPYSVVVSWQSRDHLGLNG 1417
                       |..|..|.|....::..:.. ||...:.|.....:|....:........:....
  Fly   504 -----------CVTPPRLEGAPLLQVPVETLSCDMDNVEKDNANIMQHLETLAKPNQTSPIKDLS 557

  Fly  1418 FEIVYH----ATGDGLVTAGSPTSRERDSLRD---IHDPERQRTRDQARERSRERDRDRERDRER 1475
            .||:.|    :|..||:........::|.:.|   ::                     :|.....
  Fly   558 EEIILHELHFSTDYGLILTWLLNLSKKDYMCDAIFVY---------------------KEEHINE 601

  Fly  1476 FSIATDEIH--GKRLNGTASSTKL----TKLSPNTRYHICVIGSGNWLSEPLANALQRLHTNESL 1534
            ..|....||  .|.:||..:.:.:    :.|.....|..|::    .:.|...::...:..:...
  Fly   602 ILIDNSPIHCESKVVNGQNTVSVIVPDSSSLEIGESYRFCLV----MIQEQKPDSELNIGCSNIT 662

  Fly  1535 REEEAVMMSAPLPESFSPYQHQHNRNSNGNAN---PAMVQDHNKKQNPDQDLDNVVGQDNALMEV 1596
            |.|.    |:|   ...|...|:.|....|||   |.:|.|              .|:|..:.:.
  Fly   663 RLER----SSP---GAVPVSRQYQRRPYYNANELKPEVVHD--------------AGEDYQVNQR 706

  Fly  1597 LKNSHISACTDVQTLDSTPSLVTDENGLSSNGFIHS---ILTRRLGLIVGCCLGIIVFIVMISVL 1658
            ..||.:.: ...||..||              .:||   |.:.....:.|..||::|..|::.:.
  Fly   707 RFNSVVGS-QPQQTQQST--------------LLHSYTVIDSLNKSFLPGLGLGVLVTSVLVLIW 756

  Fly  1659 SYVKLKKKRIENAKRQAALPPEYISYRHFSIPNEELTRTAANAGTVAAAAAANNS--HNSNNSTD 1721
            ...:::                            :...::...|....:..:|:|  ||:||::.
  Fly   757 GATRIR----------------------------QTGGSSGGGGRNGDSIDSNSSSMHNNNNNSR 793

  Fly  1722 EGSSPHMSSVPSGISAHISGTSLSTGGTGTGSTTTTATTPI 1762
            .|:.  .::.....|.||:  .|:....||......|||.:
  Fly   794 PGTP--TATTCYAASDHIA--RLADAENGTRYLKLQATTSL 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42346NP_001036303.2 leucine-rich repeat 303..325 CDD:275380
LRR_8 325..384 CDD:290566
leucine-rich repeat 327..350 CDD:275380
leucine-rich repeat 351..461 CDD:275380
LRR_8 373..433 CDD:290566
LRR_RI 397..648 CDD:238064
leucine-rich repeat 399..422 CDD:275380
leucine-rich repeat 462..485 CDD:275380
LRR_8 465..520 CDD:290566
leucine-rich repeat 486..509 CDD:275380
LRR_8 508..567 CDD:290566
leucine-rich repeat 510..533 CDD:275380
LRR_RI 527..785 CDD:238064
leucine-rich repeat 534..556 CDD:275380
LRR_8 555..613 CDD:290566
leucine-rich repeat 557..580 CDD:275380
leucine-rich repeat 581..604 CDD:275380
LRR_8 604..663 CDD:290566
leucine-rich repeat 605..628 CDD:275380
leucine-rich repeat 629..652 CDD:275380
LRR_8 652..711 CDD:290566
leucine-rich repeat 653..676 CDD:275380
leucine-rich repeat 677..700 CDD:275380
leucine-rich repeat 701..748 CDD:275380
leucine-rich repeat 725..736 CDD:275378
leucine-rich repeat 749..772 CDD:275380
LRR_8 771..831 CDD:290566
leucine-rich repeat 773..793 CDD:275380
LRR_RI 804..1076 CDD:238064 54/170 (32%)
LRR_8 821..903 CDD:290566
leucine-rich repeat 821..844 CDD:275380
leucine-rich repeat 845..868 CDD:275380
leucine-rich repeat 869..892 CDD:275380
leucine-rich repeat 893..915 CDD:275380 1/2 (50%)
leucine-rich repeat 916..944 CDD:275380 8/28 (29%)
leucine-rich repeat 945..968 CDD:275380 8/25 (32%)
LRR_8 967..1027 CDD:290566 20/60 (33%)
leucine-rich repeat 969..992 CDD:275380 4/23 (17%)
leucine-rich repeat 993..1014 CDD:275380 7/20 (35%)
LRR_8 1015..1075 CDD:290566 22/59 (37%)
leucine-rich repeat 1017..1040 CDD:275380 8/22 (36%)
leucine-rich repeat 1041..1064 CDD:275380 9/22 (41%)
LRR_RI <1047..1244 CDD:238064 53/201 (26%)
LRR_8 1063..1125 CDD:290566 17/66 (26%)
leucine-rich repeat 1089..1114 CDD:275380 6/27 (22%)
leucine-rich repeat 1115..1162 CDD:275380 9/46 (20%)
LRR_8 1163..1219 CDD:290566 19/55 (35%)
leucine-rich repeat 1163..1186 CDD:275380 8/22 (36%)
leucine-rich repeat 1187..1210 CDD:275380 9/22 (41%)
leucine-rich repeat 1211..1233 CDD:275380 6/21 (29%)
leucine-rich repeat 1234..1257 CDD:275380 4/22 (18%)
LRR_8 1235..1292 CDD:290566 11/56 (20%)
leucine-rich repeat 1258..1279 CDD:275380 7/20 (35%)
leucine-rich repeat 1282..1306 CDD:275380 3/23 (13%)
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 56/195 (29%)
leucine-rich repeat 179..199 CDD:275378 7/19 (37%)
leucine-rich repeat 200..223 CDD:275380 4/22 (18%)
leucine-rich repeat 225..248 CDD:275380 8/22 (36%)
LRR_8 249..307 CDD:290566 21/57 (37%)
leucine-rich repeat 249..272 CDD:275380 8/22 (36%)
LRR_RI <270..479 CDD:238064 71/284 (25%)
leucine-rich repeat 273..296 CDD:275380 9/22 (41%)
leucine-rich repeat 297..322 CDD:275380 6/24 (25%)
LRR_8 322..382 CDD:290566 19/87 (22%)
leucine-rich repeat 323..347 CDD:275380 6/27 (22%)
leucine-rich repeat 348..371 CDD:275380 9/46 (20%)
LRR_8 370..428 CDD:290566 19/57 (33%)
leucine-rich repeat 372..395 CDD:275380 8/22 (36%)
leucine-rich repeat 396..419 CDD:275380 9/22 (41%)
LRR_8 418..478 CDD:290566 23/107 (21%)
leucine-rich repeat 420..443 CDD:275380 10/45 (22%)
leucine-rich repeat 444..467 CDD:275380 7/43 (16%)
LRRCT 476..526 CDD:214507 15/74 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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