DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42346 and 18w

DIOPT Version :9

Sequence 1:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster
Sequence 2:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0004364 Length:1385 Species:Drosophila melanogaster


Alignment Length:990 Identity:254/990 - (25%)
Similarity:400/990 - (40%) Gaps:238/990 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   465 LDLSSNQ----FAEIGPDCFRAFPQLKTLSFYANQIELVQPEAFKSLRELMSLDM-SHNRIIGLD 524
            |||..:|    .:|:.|..||...:|..|...|.:::.|.|.||:.|..|..|.: |||.:.|  
  Fly    67 LDLQCSQELLHASELAPGLFRQLQKLSELRIDACKLQRVPPNAFEGLMSLKRLTLESHNAVWG-- 129

  Fly   525 PKVFEKNKRLQTVDLSHNHIHTIGGVFSNLPQLREVFLSENNILELPADAFTNSTNVDVIYLESN 589
                 ..|.|:        :|  |..|..|.:|.|:.|.:|||.:||...:.:..::.::.|..|
  Fly   130 -----PGKTLE--------LH--GQSFQGLKELSELHLGDNNIRQLPEGVWCSMPSLQLLNLTQN 179

  Fly   590 AIAHIDPNVFSTLVNLDHLYLRSNFIPLLPVTLFDKSTKLTSLSLDN------NEIQDLEIGMFR 648
            .|...:...||                       :|....::||..|      :|:|.|::. |.
  Fly   180 RIRSAEFLGFS-----------------------EKLCAGSALSNANGAVSGGSELQTLDVS-FN 220

  Fly   649 KLEHLREVRLHNNRIRRVRRGVFEPLPSLQELHIQKNSIEDIEPQAFHTLENMQHINLQDNQLTV 713
            :|..|.:. ...:|:||           ||.|.:|.|:|..:.|.|...|.:::.:|:..|.|..
  Fly   221 ELRSLPDA-WGASRLRR-----------LQTLSLQHNNISTLAPNALAGLSSLRVLNISYNHLVS 273

  Fly   714 LEDIFPDE----NSSLLSVQLEANYLHKVHPRTFSRQQKVQIMWLKDNQLT--RVERSFFADTPQ 772
            |    |.|    |..|..:.|:.|.|:::......|.:::.::.|..||||  .|:.|.||...:
  Fly   274 L----PSEAFAGNKELRELHLQGNDLYELPKGLLHRLEQLLVLDLSGNQLTSHHVDNSTFAGLIR 334

  Fly   773 LGRLYLSDNKIRDIEKDTFVNLLLLQFLDLSGNQLRQLRRDYFAPLQDLEELSLARNHIEAIEGY 837
            |..|.||:|.:..|...||..|..||.||:..|.:                     .|||  || 
  Fly   335 LIVLNLSNNALTRIGSKTFKELYFLQILDMRNNSI---------------------GHIE--EG- 375

  Fly   838 AFAKLKNLKSLDLSHNPLVQLTRDIFSNEFPLNSLNLGNCSLRKLEQHAFKSLTNLNELNLERNQ 902
            ||..|.||.:|:|:.|.|..|...||:..:.|..|.|.|..:..:|..||::.::|.||:|..||
  Fly   376 AFLPLYNLHTLNLAENRLHTLDNRIFNGLYVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSSNQ 440

  Fly   903 LNPADIQTLDIPNLRRLLLSHNNFSYAGSVGIMAGMLDRLRSLQQLS--------MSNCSLGQIP 959
            |........|:..|:.|.|..|..|...:        :..|:|.||:        :.|.::|...
  Fly   441 LTEVPEAVQDLSMLKTLDLGENQISEFKN--------NTFRNLNQLTGLRLIDNRIGNITVGMFQ 497

  Fly   960 DLLFAKNTNLVRLDLCDNRLTQINRNIFSGLNVFKELRLCRNELSDFPHIALYNLSTLESLDLAR 1024
            ||     ..|..|:|..||:..|.|..|......:.:||.:|.|:|...| ...|::|..|:|:.
  Fly   498 DL-----PRLSVLNLAKNRIQSIERGAFDKNTEIEAIRLDKNFLTDINGI-FATLASLLWLNLSE 556

  Fly  1025 NQLASIDFFKLSGTLNLRQLILRDNKITALSGF----NAVNLTQLDSVDLSGNLLLSLPANFLRH 1085
            |.|...|:..:..  ||:.|.:..|.|.||..:    ..:.:|.||:   |.|.:..:.|..:.:
  Fly   557 NHLVWFDYAFIPS--NLKWLDIHGNYIEALGNYYKLQEEIRVTTLDA---SHNRITEIGAMSVPN 616

  Fly  1086 SINLQKVHLSNNRFLQIPSSALSDVSIPRLSWLNLTGNPIN-------RIYTVKEERYPYLKELY 1143
            ||.|  :.::||...||.::...|.:  ||:.::|..|.::       |:..|..|: | :.|.|
  Fly   617 SIEL--LFINNNIIGQIQANTFVDKT--RLARVDLYANVLSKISLNALRVAPVSAEK-P-VPEFY 675

  Fly  1144 ICQTNLSILTSKDFEAFQALQHLHLVNNRITR--------------------------------- 1175
                    |....||...:::.|..:||..||                                 
  Fly   676 --------LGGNPFECDCSMEWLQRINNLTTRQHPHVVDLGNIECLMPHSRSAPLRPLASLSASD 732

  Fly  1176 -------------------------ISPG--------------------AFKSLTNLLTLDLS-- 1193
                                     |.||                    ...:|.|.:..|:|  
  Fly   733 FVCKYESHCPPTCHCCEYEQCECEVICPGNCSCFHDATWATNIVDCGRQDLAALPNRIPQDVSDL 797

  Fly  1194 ---VNELEMLPKERLQGLRLLRFLNISHNTLKDLEEFSV-DLLEMQTLDLSFNQLDRISKKTFRN 1254
               .|.:..|....|.|.|.||.|.::.:.|..|:..|: .|:.::.|.|..|:|..:....||:
  Fly   798 YLDGNNMPELEVGHLTGRRNLRALYLNASNLMTLQNGSLAQLVNLRVLHLENNKLTALEGTEFRS 862

  Fly  1255 LHGLLELFLMGNRMTVLSNDAFRFLRKLHVLDLRKNYFELVPLEPLRPLETNLRTLRLEENPLHC 1319
            |..|.||:|..|.:|.:||..|..|..|.||.|..|....:|....|   .:|:.|.|..|...|
  Fly   863 LGLLRELYLHNNMLTHISNATFEPLVSLEVLRLDNNRLSSLPHLQYR---HSLQGLTLGRNAWSC 924

  Fly  1320 SC-DAQKLWEWLRDH 1333
            .| ..::|.:::.|:
  Fly   925 RCQQLRELAQFVSDN 939

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42346NP_001036303.2 leucine-rich repeat 303..325 CDD:275380
LRR_8 325..384 CDD:290566
leucine-rich repeat 327..350 CDD:275380
leucine-rich repeat 351..461 CDD:275380
LRR_8 373..433 CDD:290566
LRR_RI 397..648 CDD:238064 48/193 (25%)
leucine-rich repeat 399..422 CDD:275380
leucine-rich repeat 462..485 CDD:275380 8/23 (35%)
LRR_8 465..520 CDD:290566 21/59 (36%)
leucine-rich repeat 486..509 CDD:275380 8/22 (36%)
LRR_8 508..567 CDD:290566 16/59 (27%)
leucine-rich repeat 510..533 CDD:275380 6/23 (26%)
LRR_RI 527..785 CDD:238064 67/269 (25%)
leucine-rich repeat 534..556 CDD:275380 5/21 (24%)
LRR_8 555..613 CDD:290566 13/57 (23%)
leucine-rich repeat 557..580 CDD:275380 8/22 (36%)
leucine-rich repeat 581..604 CDD:275380 5/22 (23%)
LRR_8 604..663 CDD:290566 10/64 (16%)
leucine-rich repeat 605..628 CDD:275380 1/22 (5%)
leucine-rich repeat 629..652 CDD:275380 8/28 (29%)
LRR_8 652..711 CDD:290566 15/58 (26%)
leucine-rich repeat 653..676 CDD:275380 4/22 (18%)
leucine-rich repeat 677..700 CDD:275380 9/22 (41%)
leucine-rich repeat 701..748 CDD:275380 12/50 (24%)
leucine-rich repeat 725..736 CDD:275378 3/10 (30%)
leucine-rich repeat 749..772 CDD:275380 9/24 (38%)
LRR_8 771..831 CDD:290566 14/59 (24%)
leucine-rich repeat 773..793 CDD:275380 8/19 (42%)
LRR_RI 804..1076 CDD:238064 79/283 (28%)
LRR_8 821..903 CDD:290566 29/81 (36%)
leucine-rich repeat 821..844 CDD:275380 8/22 (36%)
leucine-rich repeat 845..868 CDD:275380 8/22 (36%)
leucine-rich repeat 869..892 CDD:275380 7/22 (32%)
leucine-rich repeat 893..915 CDD:275380 8/21 (38%)
leucine-rich repeat 916..944 CDD:275380 5/27 (19%)
leucine-rich repeat 945..968 CDD:275380 7/30 (23%)
LRR_8 967..1027 CDD:290566 19/59 (32%)
leucine-rich repeat 969..992 CDD:275380 8/22 (36%)
leucine-rich repeat 993..1014 CDD:275380 6/20 (30%)
LRR_8 1015..1075 CDD:290566 18/63 (29%)
leucine-rich repeat 1017..1040 CDD:275380 6/22 (27%)
leucine-rich repeat 1041..1064 CDD:275380 6/26 (23%)
LRR_RI <1047..1244 CDD:238064 58/291 (20%)
LRR_8 1063..1125 CDD:290566 18/61 (30%)
leucine-rich repeat 1089..1114 CDD:275380 6/24 (25%)
leucine-rich repeat 1115..1162 CDD:275380 12/53 (23%)
LRR_8 1163..1219 CDD:290566 20/138 (14%)
leucine-rich repeat 1163..1186 CDD:275380 9/100 (9%)
leucine-rich repeat 1187..1210 CDD:275380 6/27 (22%)
leucine-rich repeat 1211..1233 CDD:275380 7/22 (32%)
leucine-rich repeat 1234..1257 CDD:275380 7/22 (32%)
LRR_8 1235..1292 CDD:290566 22/56 (39%)
leucine-rich repeat 1258..1279 CDD:275380 9/20 (45%)
leucine-rich repeat 1282..1306 CDD:275380 7/23 (30%)
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380 8/23 (35%)
leucine-rich repeat 92..115 CDD:275380 8/22 (36%)
LRR_8 115..181 CDD:290566 22/82 (27%)
leucine-rich repeat 116..146 CDD:275380 12/46 (26%)
leucine-rich repeat 147..170 CDD:275380 8/22 (36%)
leucine-rich repeat 171..201 CDD:275380 7/52 (13%)
LRR_RI 210..464 CDD:238064 89/294 (30%)
leucine-rich repeat 212..236 CDD:275380 6/25 (24%)
LRR_8 235..295 CDD:290566 21/74 (28%)
leucine-rich repeat 237..260 CDD:275380 9/22 (41%)
leucine-rich repeat 261..284 CDD:275380 7/26 (27%)
LRR_8 283..345 CDD:290566 19/61 (31%)
leucine-rich repeat 285..308 CDD:275380 5/22 (23%)
leucine-rich repeat 309..334 CDD:275380 9/24 (38%)
LRR_8 334..393 CDD:290566 27/82 (33%)
leucine-rich repeat 335..358 CDD:275380 9/22 (41%)
leucine-rich repeat 359..382 CDD:275380 13/46 (28%)
LRR_8 382..441 CDD:290566 21/58 (36%)
leucine-rich repeat 383..406 CDD:275380 8/22 (36%)
leucine-rich repeat 407..430 CDD:275380 7/22 (32%)
LRR_8 431..488 CDD:290566 17/64 (27%)
leucine-rich repeat 431..451 CDD:275380 7/19 (37%)
leucine-rich repeat 454..477 CDD:275380 7/30 (23%)
LRR_8 477..559 CDD:290566 25/87 (29%)
leucine-rich repeat 478..499 CDD:275380 3/20 (15%)
leucine-rich repeat 502..525 CDD:275380 8/22 (36%)
leucine-rich repeat 526..548 CDD:275380 7/22 (32%)
leucine-rich repeat 590..617 CDD:275380 6/29 (21%)
leucine-rich repeat 618..641 CDD:275380 7/26 (27%)
leucine-rich repeat 642..689 CDD:275380 12/56 (21%)
LRRCT 679..736 CDD:214507 7/56 (13%)
leucine-rich repeat 775..796 CDD:275380 3/20 (15%)
LRR_8 797..852 CDD:290566 15/54 (28%)
leucine-rich repeat 797..817 CDD:275380 4/19 (21%)
leucine-rich repeat 818..841 CDD:275380 7/22 (32%)
LRR_8 841..900 CDD:290566 22/58 (38%)
leucine-rich repeat 842..865 CDD:275380 7/22 (32%)
LRR_4 866..907 CDD:289563 16/40 (40%)
leucine-rich repeat 866..889 CDD:275380 10/22 (45%)
leucine-rich repeat 890..911 CDD:275380 7/23 (30%)
TIR 1045..1183 CDD:214587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453699
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45617
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.