DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42346 and Cd180

DIOPT Version :10

Sequence 1:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster
Sequence 2:NP_001099875.1 Gene:Cd180 / 294706 RGDID:1308170 Length:662 Species:Rattus norvegicus


Alignment Length:780 Identity:178/780 - (22%)
Similarity:287/780 - (36%) Gaps:196/780 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   618 LPVTLFDKSTKLTSLSLDNNEIQDLEIGMFRKLEHLREVRLHNNRIRRVRRGVFE---PLP-SLQ 678
            |.|.||..|.:  ::...:....:.|:......|||               |:.|   .|| |.:
  Rat     9 LLVALFSASCQ--AIGSSDQRCTEKEVNKTYNCEHL---------------GLSEIPGTLPNSTE 56

  Fly   679 ELHIQKNSIEDIEPQAFHTLENMQHINLQDNQLTVLEDIFPDENSSLLSVQLEANYLHKVHPRTF 743
            .|....|::..|:...|..|.|:..::|...|                        ::.:|..||
  Rat    57 SLEFSFNALPTIQKTTFSRLVNLTFLDLTRCQ------------------------IYWIHEDTF 97

  Fly   744 SRQQKVQIMWLKDNQLTRVERSFFADTPQLG-----RLYLSDNKIRDIEKDTFVNLLLLQFLDLS 803
            ..|.:::.:.|..|.|.     |.|:|...|     .|:.....|..||                
  Rat    98 QSQHRLETLVLTANPLI-----FMAETALTGPKALKHLFFIQTGISSIE---------------- 141

  Fly   804 GNQLRQLRRDYFAPLQD---LEELSLARNHIEAIEGYAFAKLKNLKSLDLSHNPLVQLTR-DIFS 864
                       |.|:..   ||.|.|..|||.:|........:.||.||..:|.:..|:: |:.|
  Rat   142 -----------FIPVHSQKALESLYLGSNHISSIRLPKDFPTEKLKVLDFQNNAIHHLSKEDVSS 195

  Fly   865 NEFPLN-SLNLGNCSLRKLEQHAFKSLTNLNELNLERNQLNPADIQTLDIPNLRRLLLSHNNFSY 928
            .:...| ||||....:..:|..||||..                .|:|:....:.||:.      
  Rat   196 LQQATNLSLNLNGNDITGIEPGAFKSTV----------------FQSLNFGGTQSLLVI------ 238

  Fly   929 AGSVGIMAGMLDRLRSLQQLSMSNCSLGQIPDLLFAKNTNLVRLDLCDNRLTQINRNIFSGL--N 991
                         .:.||..::.:..||...|:              |:. ..|:.::|.||  .
  Rat   239 -------------FKGLQNSTIQSLWLGTFEDI--------------DDD-EDISSSMFEGLCEM 275

  Fly   992 VFKELRLCRNELSDFPHIALYNLSTLESLDLARNQLASIDFFKLSGTLNLRQLILRDNKITALSG 1056
            ..:.:.|.::...:......|..|.|:.|||....|..:. ..:.|...|::|:|..||...|..
  Rat   276 SVERINLQKHHFFNITSNTFYCFSGLQELDLTATHLTELP-SGIVGLSKLKKLVLSANKFENLCQ 339

  Fly  1057 FNAVNLTQLDSVDLSGNL-LLSLPANFLRHSINLQKVHLSNNRFLQIPSSALSDVSIPRLSW--- 1117
            .:|.|...|..:.:.||. .|.|.:..|....:|:::.||::   .|.:|...::.:..||.   
  Rat   340 ISASNFPSLTHLYIKGNTKRLELGSGCLETLEHLRELDLSHD---DIETSDCCNLQLRNLSHLQS 401

  Fly  1118 LNLTGNPINRIYTVKEERYPYLKELYICQTNLSILTSKDFEAFQALQHLHLVNNRITRISPGAFK 1182
            |||:.|....:.|...:..|.|:.|.:..|.|.:   ||  |....|:|||              
  Rat   402 LNLSYNEPLGLRTEAFKECPQLELLDLAFTRLHV---KD--AQSPFQNLHL-------------- 447

  Fly  1183 SLTNLLTLDLSVNELEMLPKERLQGLRLLRFLNISHNTLKDLEEFSVDLLE----MQTLDLSFNQ 1243
                |..|:||...|....:..|.||..||.||:..|...:......:.|:    ::.|.|||..
  Rat   448 ----LKVLNLSHCLLGSSNQHLLDGLPALRHLNLQGNRFPNGNIQKTNPLQALGSLEILILSFCD 508

  Fly  1244 LDRISKKTFRNLHGLLELFLMGNRMTVLSNDAFRFLRKLHVLDLRKNYFELVPLEPLRPLETNLR 1308
            |..|..:.|.||..:..:.|..||:|..|.:|...|:.:: |:|..|...::| ..|.|:.:..|
  Rat   509 LSSIDHQAFINLKIMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNRISIIP-PSLLPVLSQQR 571

  Fly  1309 TLRLEENPLHCSCDAQKLWEWLRDHRKWSLSMGSGAGRGIGGLTGGLGGDSINYLRCEHPTELRG 1373
            |:.|.:|||.|:|......||.:::.:..                    :.|....|.:|..|||
  Rat   572 TINLRQNPLDCTCSNIYFLEWYKENMQKL--------------------EDIEDTFCANPPLLRG 616

  Fly  1374  1373
              Rat   617  616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42346NP_001036303.2 LRR <301..606 CDD:443914
leucine-rich repeat 303..325 CDD:275380
leucine-rich repeat 327..350 CDD:275380
leucine-rich repeat 351..461 CDD:275380
leucine-rich repeat 399..422 CDD:275380
leucine-rich repeat 462..485 CDD:275380
LRR 486..>736 CDD:443914 22/121 (18%)
leucine-rich repeat 486..509 CDD:275380
leucine-rich repeat 510..533 CDD:275380
leucine-rich repeat 534..556 CDD:275380
leucine-rich repeat 557..580 CDD:275380
leucine-rich repeat 581..604 CDD:275380
leucine-rich repeat 605..628 CDD:275380 5/9 (56%)
PPP1R42 627..860 CDD:455733 48/244 (20%)
leucine-rich repeat 629..652 CDD:275380 1/22 (5%)
leucine-rich repeat 653..676 CDD:275380 5/26 (19%)
leucine-rich repeat 677..700 CDD:275380 5/22 (23%)
leucine-rich repeat 701..748 CDD:275380 6/46 (13%)
leucine-rich repeat 725..736 CDD:275378 0/10 (0%)
leucine-rich repeat 749..772 CDD:275380 6/22 (27%)
leucine-rich repeat 773..793 CDD:275380 5/24 (21%)
leucine-rich repeat 821..844 CDD:275380 8/22 (36%)
leucine-rich repeat 845..868 CDD:275380 8/23 (35%)
LRR 869..1226 CDD:443914 84/363 (23%)
leucine-rich repeat 869..892 CDD:275380 10/23 (43%)
leucine-rich repeat 893..915 CDD:275380 2/21 (10%)
leucine-rich repeat 916..944 CDD:275380 2/27 (7%)
leucine-rich repeat 945..968 CDD:275380 5/22 (23%)
leucine-rich repeat 969..992 CDD:275380 5/24 (21%)
leucine-rich repeat 993..1014 CDD:275380 2/20 (10%)
leucine-rich repeat 1017..1040 CDD:275380 6/22 (27%)
leucine-rich repeat 1041..1064 CDD:275380 8/22 (36%)
leucine-rich repeat 1089..1114 CDD:275380 5/24 (21%)
leucine-rich repeat 1115..1162 CDD:275380 15/49 (31%)
PPP1R42 1155..1317 CDD:455733 47/165 (28%)
leucine-rich repeat 1163..1186 CDD:275380 4/22 (18%)
leucine-rich repeat 1187..1210 CDD:275380 8/22 (36%)
leucine-rich repeat 1211..1233 CDD:275380 5/21 (24%)
leucine-rich repeat 1234..1257 CDD:275380 9/22 (41%)
leucine-rich repeat 1258..1279 CDD:275380 6/20 (30%)
leucine-rich repeat 1282..1306 CDD:275380 6/23 (26%)
Cd180NP_001099875.1 PRK15370 <44..>209 CDD:185268 50/220 (23%)
leucine-rich repeat 55..78 CDD:275380 5/22 (23%)
leucine-rich repeat 79..102 CDD:275380 6/46 (13%)
leucine-rich repeat 103..126 CDD:275380 7/27 (26%)
leucine-rich repeat 127..150 CDD:275380 6/49 (12%)
leucine-rich repeat 151..174 CDD:275380 8/22 (36%)
leucine-rich repeat 175..195 CDD:275380 7/19 (37%)
LRR 194..560 CDD:443914 105/443 (24%)
leucine-rich repeat 196..223 CDD:275380 10/26 (38%)
leucine-rich repeat 224..244 CDD:275380 5/38 (13%)
leucine-rich repeat 277..300 CDD:275380 2/22 (9%)
leucine-rich repeat 301..323 CDD:275380 6/22 (27%)
leucine-rich repeat 324..347 CDD:275380 8/22 (36%)
leucine-rich repeat 348..372 CDD:275380 6/23 (26%)
leucine-rich repeat 373..398 CDD:275380 6/27 (22%)
leucine-rich repeat 399..422 CDD:275380 5/22 (23%)
leucine-rich repeat 423..447 CDD:275380 9/28 (32%)
leucine-rich repeat 448..471 CDD:275380 8/22 (36%)
leucine-rich repeat 472..498 CDD:275380 6/25 (24%)
leucine-rich repeat 499..522 CDD:275380 9/22 (41%)
leucine-rich repeat 523..546 CDD:275380 7/22 (32%)
PCC 550..>616 CDD:188093 19/86 (22%)
Blue background indicates that the domain is not in the aligned region.

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