DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42346 and Tlr4

DIOPT Version :10

Sequence 1:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster
Sequence 2:NP_062051.2 Gene:Tlr4 / 29260 RGDID:3870 Length:835 Species:Rattus norvegicus


Alignment Length:896 Identity:193/896 - (21%)
Similarity:330/896 - (36%) Gaps:253/896 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   615 IPLLPVTLFDKSTKLTSLSLDNNEIQDLEIGMFRKLEH-----LREVRLHNNRIRRVRRGVFEPL 674
            |.:||        .:|...:|.|         ..|:.|     .:.:.|..|.::.:|...|...
  Rat    29 IEVLP--------NITYQCMDQN---------LSKIPHDIPYSTKNLDLSFNPLKILRSYSFSNF 76

  Fly   675 PSLQELHIQKNSIEDIEPQAFHTLENMQHINLQDNQLTVLEDIFPDENSSLLSVQLEANYLHKVH 739
            ..||.|.:.:..||.||.:|:|.|          |||:.|              .|..|.:....
  Rat    77 SQLQWLDLSRCEIETIEDKAWHGL----------NQLSTL--------------VLTGNPIKSFS 117

  Fly   740 PRTFSRQQKVQIMWLKDNQLTRVERSFFADTPQLGRLYLSDNKIRDIEKDTFVNLLLLQFLDLSG 804
            |.:||             .||.:|           .|...:.|:..:|......|:.|:.|:::.
  Rat   118 PGSFS-------------GLTNLE-----------NLVAVETKMTSLEGFHIGQLISLKKLNVAH 158

  Fly   805 NQLRQLR-RDYFAPLQDLEELSLARNHIEAIEGYAFAKLKNLKSLD-LSHNPLVQLTRDIFSNEF 867
            |.:...: .:||:.|.:||.:.|:.|:|:.|         ::|.|. |..||.|.|:.|:..|  
  Rat   159 NLIHSFKLPEYFSNLTNLEHVDLSYNYIQTI---------SVKDLQFLRENPQVNLSLDLSLN-- 212

  Fly   868 PLNSLNLGNCSLRKLEQHAFKSLTNLNELNLERNQLNPADIQTLDIPNLRRLLLSHNNFSYAGSV 932
            |::|          ::..||:.: .|:||.| |:..|.:::..:.:.|                 
  Rat   213 PIDS----------IQAQAFQGI-RLHELTL-RSNFNSSNVLKMCLQN----------------- 248

  Fly   933 GIMAGMLDRLRSLQQLSMSNCSLGQIPDLLFAKNTNLVRLDLCDNRLTQINRNIFSGL-NV-FKE 995
              |.|          |.:....||:.      ||         :..|...:|::..|| || ..|
  Rat   249 --MTG----------LHVHRLILGEF------KN---------ERNLESFDRSVMEGLCNVSIDE 286

  Fly   996 LRLCR-NELSDFPHIALYNLSTLESLDLARNQLASIDFFKLSGTLNLRQL--ILRDNKITALS-- 1055
            .||.. |..||    .:|||          |.||:|.....:| ::::.:  :.|..|..:||  
  Rat   287 FRLTYINHFSD----DIYNL----------NCLANISAMSFTG-VHIKHIADVPRHFKWQSLSII 336

  Fly  1056 -----GFNAVNLTQLDSVDLSGNLLLSLPANFLRHSINLQKVHLSNNRFLQIPSSAL-------- 1107
                 .|..::|..|.|..|:.|          |..|:..::.|.:.|:|.:..:|:        
  Rat   337 RCHLKPFPKLSLPFLKSWTLTTN----------REDISFGQLALPSLRYLDLSRNAMSFRGCCSY 391

  Fly  1108 SDVSIPRLSWLNLTGNPINRIYTVKEERYPYLKELYICQTNLSILTSKDFEAFQALQHL---HLV 1169
            ||.....|.:|:|:.|.:                         ||.|.:|...:.|::|   |..
  Rat   392 SDFGTNNLKYLDLSFNGV-------------------------ILMSANFMGLEELEYLDFQHST 431

  Fly  1170 NNRITRISPGAFKSLTNLLTLDLSVNELEMLPKERLQGLRLLRFLNISHNTLKD--LEEFSVDLL 1232
            ..::|..|  .|.||..||.||:|....::.......||..|..|.::.|:.||  |.....:..
  Rat   432 LKKVTEFS--VFLSLEKLLYLDISYTNTKIDFDGIFLGLISLNTLKMAGNSFKDNTLSNVFTNTT 494

  Fly  1233 EMQTLDLSFNQLDRISKKTFRNLHGLLELFLMGNRMTVLSNDAFRFLRKLHVLDLRKNYFELVPL 1297
            .:..||||..||::||:..|..|:.|..|.:..|.:..|....::.|..|..||...|..| ...
  Rat   495 NLTFLDLSKCQLEQISRGVFDTLYRLQLLNMSHNNLLFLDPSHYKQLYSLRTLDCSFNRIE-TSK 558

  Fly  1298 EPLRPLETNLRTLRLEENPLHCSCDAQKLWEWLRDHRKWSLSMGSGAGRGIGGLTGGLGGDSINY 1362
            ..|:....:|....|..|.:.|.|:.|...:|::|.:.:.:                    ::..
  Rat   559 GILQHFPKSLAVFNLTNNSVACICEYQNFLQWVKDQKMFLV--------------------NVEQ 603

  Fly  1363 LRCEHPTELRGKVFGRMEPQQFCDAPLIPKMAIQDIQPYSVVVSWQSRDHLGLNGFEIVYHATGD 1427
            ::|..|.:::..:.     ..|.::.......|..:...||:|       :....| ::||....
  Rat   604 MKCASPIDMKASLV-----LDFTNSTCYIYKTIISVSVVSVLV-------VATVAF-LIYHFYFH 655

  Fly  1428 GLVTAGSPTSRERDSLRDIHDPERQRTRDQARERSRERDRDRERDRERFSI 1478
            .::.||.......:|:.|.......:..|..|   .|..::.|....||.:
  Rat   656 LILIAGCKKYSRGESIYDAFVIYSSQNEDWVR---NELVKNLEEGVPRFQL 703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42346NP_001036303.2 LRR <301..606 CDD:443914
leucine-rich repeat 303..325 CDD:275380
leucine-rich repeat 327..350 CDD:275380
leucine-rich repeat 351..461 CDD:275380
leucine-rich repeat 399..422 CDD:275380
leucine-rich repeat 462..485 CDD:275380
LRR 486..>736 CDD:443914 28/125 (22%)
leucine-rich repeat 486..509 CDD:275380
leucine-rich repeat 510..533 CDD:275380
leucine-rich repeat 534..556 CDD:275380
leucine-rich repeat 557..580 CDD:275380
leucine-rich repeat 581..604 CDD:275380
leucine-rich repeat 605..628 CDD:275380 3/12 (25%)
PPP1R42 627..860 CDD:455733 54/239 (23%)
leucine-rich repeat 629..652 CDD:275380 4/22 (18%)
leucine-rich repeat 653..676 CDD:275380 4/22 (18%)
leucine-rich repeat 677..700 CDD:275380 10/22 (45%)
leucine-rich repeat 701..748 CDD:275380 9/46 (20%)
leucine-rich repeat 725..736 CDD:275378 2/10 (20%)
leucine-rich repeat 749..772 CDD:275380 3/22 (14%)
leucine-rich repeat 773..793 CDD:275380 3/19 (16%)
leucine-rich repeat 821..844 CDD:275380 6/22 (27%)
leucine-rich repeat 845..868 CDD:275380 9/23 (39%)
LRR 869..1226 CDD:443914 84/381 (22%)
leucine-rich repeat 869..892 CDD:275380 3/22 (14%)
leucine-rich repeat 893..915 CDD:275380 6/21 (29%)
leucine-rich repeat 916..944 CDD:275380 2/27 (7%)
leucine-rich repeat 945..968 CDD:275380 5/22 (23%)
leucine-rich repeat 969..992 CDD:275380 4/23 (17%)
leucine-rich repeat 993..1014 CDD:275380 7/21 (33%)
leucine-rich repeat 1017..1040 CDD:275380 5/22 (23%)
leucine-rich repeat 1041..1064 CDD:275380 6/31 (19%)
leucine-rich repeat 1089..1114 CDD:275380 6/32 (19%)
leucine-rich repeat 1115..1162 CDD:275380 8/46 (17%)
PPP1R42 1155..1317 CDD:455733 46/166 (28%)
leucine-rich repeat 1163..1186 CDD:275380 8/25 (32%)
leucine-rich repeat 1187..1210 CDD:275380 7/22 (32%)
leucine-rich repeat 1211..1233 CDD:275380 6/23 (26%)
leucine-rich repeat 1234..1257 CDD:275380 10/22 (45%)
leucine-rich repeat 1258..1279 CDD:275380 4/20 (20%)
leucine-rich repeat 1282..1306 CDD:275380 6/23 (26%)
Tlr4NP_062051.2 PLN00113 23..>456 CDD:215061 136/610 (22%)
LRR 1 54..75 4/20 (20%)
leucine-rich repeat 58..78 CDD:275380 4/19 (21%)
LRR 2 78..99 8/20 (40%)
leucine-rich repeat 79..102 CDD:275380 10/32 (31%)
LRR 3 102..123 8/47 (17%)
leucine-rich repeat 103..126 CDD:275380 8/49 (16%)
LRR 4 126..147 4/31 (13%)
leucine-rich repeat 127..150 CDD:275380 5/33 (15%)
LRR 5 150..171 4/20 (20%)
leucine-rich repeat 151..175 CDD:275380 6/23 (26%)
LRR 6 175..198 8/31 (26%)
leucine-rich repeat 176..204 CDD:275380 11/36 (31%)
LRR 7 204..224 7/31 (23%)
leucine-rich repeat 205..226 CDD:275380 7/33 (21%)
LRR 8 226..247 6/21 (29%)
leucine-rich repeat 256..310 CDD:275380 23/82 (28%)
LRR <370..>578 CDD:443914 59/235 (25%)
LRR 9 372..381 2/8 (25%)
leucine-rich repeat 373..398 CDD:275380 5/24 (21%)
LRR 10 398..420 8/46 (17%)
leucine-rich repeat 399..421 CDD:275380 8/46 (17%)
LRR 11 421..442 5/22 (23%)
leucine-rich repeat 422..446 CDD:275380 8/25 (32%)
LRR 12 446..467 5/20 (25%)
leucine-rich repeat 447..470 CDD:275380 7/22 (32%)
LRR 13 470..491 6/20 (30%)
leucine-rich repeat 471..495 CDD:275380 6/23 (26%)
LRR 14 495..516 9/20 (45%)
leucine-rich repeat 496..519 CDD:275380 10/22 (45%)
LRR 15 519..540 4/20 (20%)
leucine-rich repeat 520..543 CDD:275380 5/22 (23%)
LRR 16 543..564 6/21 (29%)
leucine-rich repeat 544..567 CDD:275380 6/23 (26%)
TIR 672..813 CDD:214587 7/35 (20%)
Blue background indicates that the domain is not in the aligned region.

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