DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42346 and Lrrc8c

DIOPT Version :9

Sequence 1:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster
Sequence 2:NP_001032256.1 Gene:Lrrc8c / 289443 RGDID:1306585 Length:803 Species:Rattus norvegicus


Alignment Length:496 Identity:113/496 - (22%)
Similarity:201/496 - (40%) Gaps:137/496 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   463 IFL-DLSSNQFAEIG------PDCFRAFPQLKTLSFYANQIELVQ----PEAFKSLRELMS--LD 514
            :|| ::|.|:..::.      ||..|  .:|:|.:....::.|:.    |:....:.||.|  |:
  Rat   390 VFLSEVSENKLKQLNLNNEWTPDKLR--QKLQTNAHNRLELPLIMLSGLPDTVFEITELQSLKLE 452

  Fly   515 MSHNRIIGLDPKVFEKNKRLQTVDLSHNHIHTIGGVFSNLPQ-LREVFLSENNILELPADAFTNS 578
            :..|.:|   |....:...||.:.|....:.......|.|.: |:.:.:..:::.|||...: ..
  Rat   453 IIKNVMI---PATIAQLDNLQELSLHQCSVKIHSAALSFLKENLKVLSVKFDDMRELPPWMY-GL 513

  Fly   579 TNVDVIYLESNAIAHIDPNV----FSTLVNLDHLYLRSNFIPLLPVTLFDKSTKLTSLSLDNNEI 639
            .|::.:||..:....|..||    ...|.:|..|.::|| :..:|..:.|.|:.|..:.:.|:..
  Rat   514 RNLEELYLVGSLSHDISKNVTLESLRDLKSLKILSIKSN-VSKIPQAVVDVSSHLQKMCIHNDGT 577

  Fly   640 QDLEIGMFRKLEHLREVRLHNNRIRRVRRGVFEPLPSLQELHIQKNSIEDIEPQAFHTLENMQHI 704
            :.:.:...:|:.:|.|:.|.:..:.|:...||. |.|||||.:::|:::.||     .:.:.||:
  Rat   578 KLVMLNNLKKMTNLTELELVHCDLERIPHAVFS-LLSLQELDLKENNLKSIE-----EIVSFQHL 636

  Fly   705 NLQDNQLTVLEDIFPDENSSLLSVQLEANYLHKVHPRTFSRQQKVQIMWLKD--------NQLTR 761
                .:||||:                                    :|...        .:||.
  Rat   637 ----RKLTVLK------------------------------------LWYNSIAYIPEHIKKLTS 661

  Fly   762 VERSFFADTPQLGRLYLSDNKIRDIEKDTFVNLLLLQFLDLSGNQLRQLRRDYFAP-----LQDL 821
            :||.||           |.||:..:....|: ...:::||||.|.:|      |.|     ||.|
  Rat   662 LERLFF-----------SHNKVEVLPSHLFL-CNKIRYLDLSYNDIR------FIPPEIGVLQSL 708

  Fly   822 EELSLARNHIEAI--EGYAFAKLKNLKSLDLSHNPLVQLT-----------RDIFSNEFPLNSLN 873
            :..|:..|.:|::  |.|...|||.||   :..|.|..|:           .||..|.|.:....
  Rat   709 QYFSITCNKVESLPDELYFCKKLKTLK---IGKNSLSVLSPKIGNLLFLSYLDIKGNHFEVLPPE 770

  Fly   874 LGNCSLRK-----LEQHAFKSLTNLNELNLERNQLNPADIQ 909
            ||:|...|     :|...|::|              |:|::
  Rat   771 LGDCRALKRAGLVVEDALFETL--------------PSDVR 797

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42346NP_001036303.2 leucine-rich repeat 303..325 CDD:275380
LRR_8 325..384 CDD:290566
leucine-rich repeat 327..350 CDD:275380
leucine-rich repeat 351..461 CDD:275380
LRR_8 373..433 CDD:290566
LRR_RI 397..648 CDD:238064 43/202 (21%)
leucine-rich repeat 399..422 CDD:275380
leucine-rich repeat 462..485 CDD:275380 7/28 (25%)
LRR_8 465..520 CDD:290566 15/67 (22%)
leucine-rich repeat 486..509 CDD:275380 4/26 (15%)
LRR_8 508..567 CDD:290566 13/61 (21%)
leucine-rich repeat 510..533 CDD:275380 6/24 (25%)
LRR_RI 527..785 CDD:238064 57/270 (21%)
leucine-rich repeat 534..556 CDD:275380 5/21 (24%)
LRR_8 555..613 CDD:290566 13/62 (21%)
leucine-rich repeat 557..580 CDD:275380 4/22 (18%)
leucine-rich repeat 581..604 CDD:275380 6/26 (23%)
LRR_8 604..663 CDD:290566 13/58 (22%)
leucine-rich repeat 605..628 CDD:275380 7/22 (32%)
leucine-rich repeat 629..652 CDD:275380 3/22 (14%)
LRR_8 652..711 CDD:290566 17/58 (29%)
leucine-rich repeat 653..676 CDD:275380 7/22 (32%)
leucine-rich repeat 677..700 CDD:275380 7/22 (32%)
leucine-rich repeat 701..748 CDD:275380 6/46 (13%)
leucine-rich repeat 725..736 CDD:275378 0/10 (0%)
leucine-rich repeat 749..772 CDD:275380 7/30 (23%)
LRR_8 771..831 CDD:290566 17/64 (27%)
leucine-rich repeat 773..793 CDD:275380 4/19 (21%)
LRR_RI 804..1076 CDD:238064 33/129 (26%)
LRR_8 821..903 CDD:290566 25/99 (25%)
leucine-rich repeat 821..844 CDD:275380 8/24 (33%)
leucine-rich repeat 845..868 CDD:275380 8/33 (24%)
leucine-rich repeat 869..892 CDD:275380 7/27 (26%)
leucine-rich repeat 893..915 CDD:275380 2/17 (12%)
leucine-rich repeat 916..944 CDD:275380
leucine-rich repeat 945..968 CDD:275380
LRR_8 967..1027 CDD:290566
leucine-rich repeat 969..992 CDD:275380
leucine-rich repeat 993..1014 CDD:275380
LRR_8 1015..1075 CDD:290566
leucine-rich repeat 1017..1040 CDD:275380
leucine-rich repeat 1041..1064 CDD:275380
LRR_RI <1047..1244 CDD:238064
LRR_8 1063..1125 CDD:290566
leucine-rich repeat 1089..1114 CDD:275380
leucine-rich repeat 1115..1162 CDD:275380
LRR_8 1163..1219 CDD:290566
leucine-rich repeat 1163..1186 CDD:275380
leucine-rich repeat 1187..1210 CDD:275380
leucine-rich repeat 1211..1233 CDD:275380
leucine-rich repeat 1234..1257 CDD:275380
LRR_8 1235..1292 CDD:290566
leucine-rich repeat 1258..1279 CDD:275380
leucine-rich repeat 1282..1306 CDD:275380
Lrrc8cNP_001032256.1 Pannexin_like 1..338 CDD:289311
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 177..211
LRR 1. /evidence=ECO:0000255 397..420 5/24 (21%)
LRR 2. /evidence=ECO:0000255 421..443 2/21 (10%)
leucine-rich repeat 446..468 CDD:275380 6/24 (25%)
LRR 3. /evidence=ECO:0000255 446..466 6/22 (27%)
LRR 4. /evidence=ECO:0000255 467..488 3/20 (15%)
leucine-rich repeat 469..492 CDD:275380 5/22 (23%)
LRR 5. /evidence=ECO:0000255 490..513 4/23 (17%)
leucine-rich repeat 493..515 CDD:275380 4/22 (18%)
LRR 6. /evidence=ECO:0000255 515..537 6/21 (29%)
leucine-rich repeat 516..543 CDD:275380 6/26 (23%)
LRR 7. /evidence=ECO:0000255 541..563 6/22 (27%)
leucine-rich repeat 544..566 CDD:275380 7/22 (32%)
LRR 8. /evidence=ECO:0000255 565..587 2/21 (10%)
leucine-rich repeat 567..590 CDD:275380 3/22 (14%)
LRR 9. /evidence=ECO:0000255 588..611 6/23 (26%)
LRR_8 589..649 CDD:290566 22/105 (21%)
LRR_RI <590..695 CDD:238064 37/162 (23%)
leucine-rich repeat 591..613 CDD:275380 7/22 (32%)
LRR 10. /evidence=ECO:0000255 613..635 8/26 (31%)
leucine-rich repeat 614..638 CDD:275380 9/32 (28%)
LRR_8 637..695 CDD:290566 20/105 (19%)
LRR 11. /evidence=ECO:0000255 637..659 5/57 (9%)
leucine-rich repeat 639..661 CDD:275380 6/57 (11%)
LRR 12. /evidence=ECO:0000255 660..682 9/33 (27%)
leucine-rich repeat 662..684 CDD:275380 8/33 (24%)
LRR 13. /evidence=ECO:0000255 684..705 8/26 (31%)
LRR 14. /evidence=ECO:0000255 706..728 7/21 (33%)
LRR_8 707..764 CDD:290566 17/59 (29%)
leucine-rich repeat 708..730 CDD:275380 6/21 (29%)
LRR 15. /evidence=ECO:0000255 730..751 8/23 (35%)
leucine-rich repeat 731..752 CDD:275380 7/23 (30%)
LRR 16. /evidence=ECO:0000255 752..774 6/21 (29%)
LRR 17. /evidence=ECO:0000255 776..799 6/36 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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