DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42346 and Tlr3

DIOPT Version :10

Sequence 1:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster
Sequence 2:NP_569054.2 Gene:Tlr3 / 142980 MGIID:2156367 Length:905 Species:Mus musculus


Alignment Length:1064 Identity:242/1064 - (22%)
Similarity:401/1064 - (37%) Gaps:284/1064 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   390 HAFAGL-----------EECMQEIDVSENGLRTFPLMALRKLDHLRILRLSNNRIPTFYGDIQLA 443
            ::|.||           .:|....:|::             ..||::..:.:: :|:....:.| 
Mouse    10 YSFGGLLSLWILLVSSTNQCTVRYNVAD-------------CSHLKLTHIPDD-LPSNITVLNL- 59

  Fly   444 TNNASAAAAAVGAFQLPSLIFLDLSSNQFAEIGPDCFRAFPQLKTLSFYANQIELVQPEAFKSLR 508
            |:|...........:...|..||...|..:::.|:..:..|.||.|:...|::..:..:.|....
Mouse    60 THNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCT 124

  Fly   509 ELMSLDMSHNRIIGLDPKVFEKNKRLQTVDLSHNHI-HTIGGVFSNLPQLREVFLSENNILELPA 572
            .|..||:..|.|..:....|:..|.|..:|||||.: .|..|....|..|:|:.|::|.||.|.:
Mouse   125 NLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRS 189

  Fly   573 D--AFTNSTNVDVIYLESNAIAHIDPNVFSTLVNLDHLYLRSNFIPLLPVTLFDK------STKL 629
            :  .|..::::..:.|.||.:....|..|.|:..|..|.|  |...|.| .|.:|      :|.:
Mouse   190 EELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLL--NNAQLNP-HLTEKLCWELSNTSI 251

  Fly   630 TSLSLDNNEIQDLEIGMFRKLE--HLREVRLHNNRIRRVRRGVFEPLPSLQELHIQKNSIEDIEP 692
            .:|||.||::.......|..|:  :|.::.|..|.:..|..|.|..||||:.|.::.|:|:.:.|
Mouse   252 QNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSP 316

  Fly   693 QAFHTLENMQHINLQDNQLTVLEDIFPDENSSLLSVQLEANYLHKVHPR--TFSRQQKVQIMWLK 755
            ::|:.|.|:::::        |:..|..::.||.|           ||.  .||.|      |||
Mouse   317 RSFYGLSNLRYLS--------LKRAFTKQSVSLAS-----------HPNIDDFSFQ------WLK 356

  Fly   756 DNQLTRVERSFFADTPQLGRLYLSDNKIRDIEKDTFVNLLLLQFLDLSG--NQLRQLRRDYFAPL 818
                            .|..|.:.||.|...:.:||..|:.|::|.||.  ..|:.|..:.|..|
Mouse   357 ----------------YLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSL 405

  Fly   819 --QDLEELSLARNHIEAIEGYAFAKLKNLKSLDLSHNPLVQLTRDIFSNEFPLNSLNLGNCSLRK 881
              ..|..|:|.:|||..|....|:.|..|:.|||..|.:.|                       |
Mouse   406 AHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQ-----------------------K 447

  Fly   882 LEQHAFKSLTNLNELNLERN---QLNPADIQTLDIPNLRRLLLSHNNFSYAGSVGIMAGMLDRLR 943
            |....::.|.|:.|:.|..|   ||:.:....  :|:|:||:|......   :|.|.......||
Mouse   448 LSGQEWRGLRNIFEIYLSYNKYLQLSTSSFAL--VPSLQRLMLRRVALK---NVDISPSPFRPLR 507

  Fly   944 SLQQLSMSNCSLGQIPDLLFAKNTNLVRLDLCDNRLTQINR--------NIFSGLNVFKELRLCR 1000
            :|..|.:||.::..|.:.|.....||..||...|.|.::.:        |...||:....|.|..
Mouse   508 NLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLES 572

  Fly  1001 NELSDFPHIALYNLSTLESLDLARNQLASIDFFKLSGTLNLRQLILRDNKIT------------- 1052
            |.|.:.|.....||..|:|::|..|.|..::.|......:||.|.|:.|.||             
Mouse   573 NGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQN 637

  Fly  1053 ----------------ALSGF-NAVNLTQLDSVDLSGNLLLSLPANFLRHSINLQKVHLSNN--- 1097
                            ::|.| |.:|.|..:..:||.:.|.:.|.::....:.|.......:   
Mouse   638 LNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTPHHYYGFPLKLFDTSSCKDSAP 702

  Fly  1098 -RFLQIPSSALSDVSIPRLSWLNLTGNPINRIYTVKEERYPYLKEL-----------YIC----- 1145
             ..|.|.|:::..|.|..:..:::.|..|:..:.|...|....||:           ||.     
Mouse   703 FELLFIISTSMLLVFILVVLLIHIEGWRISFYWNVSVHRILGFKEIDTQAEQFEYTAYIIHAHKD 767

  Fly  1146 ---------------QTNLSILTSKDFEAFQALQHLHLVNNRITRISPGAFKSLTNLLTLDLSVN 1195
                           |:....|..:||||                          .:|.|:..||
Mouse   768 RDWVWEHFSPMEEQDQSLKFCLEERDFEA--------------------------GVLGLEAIVN 806

  Fly  1196 ELEMLPKERLQGLRLLRFLNISHNTLKD--LEEFSVDLLEMQTLDLSFNQLDRISKKTFRNLHGL 1258
            .::.        .|.:.|: |:|:.|||  ...|.|.....|.::              :||..:
Mouse   807 SIKR--------SRKIIFV-ITHHLLKDPLCRRFKVHHAVQQAIE--------------QNLDSI 848

  Fly  1259 LELFLMGNRMTVLSNDAFRFLRKLHVLDLRKNYFELVPLEPLRPLETNLRTLRLEENPLHCSCDA 1323
            :.:||.......|:          |.|.||:..|:                       .||..: 
Mouse   849 ILIFLQNIPDYKLN----------HALCLRRGMFK-----------------------SHCILN- 879

  Fly  1324 QKLWEWLRD-----HRKWSLSMGS 1342
               |...::     |.|..:::||
Mouse   880 ---WPVQKERINAFHHKLQVALGS 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42346NP_001036303.2 LRR <301..606 CDD:443914 52/229 (23%)
leucine-rich repeat 303..325 CDD:275380
leucine-rich repeat 327..350 CDD:275380
leucine-rich repeat 351..461 CDD:275380 11/81 (14%)
leucine-rich repeat 399..422 CDD:275380 1/22 (5%)
leucine-rich repeat 462..485 CDD:275380 5/22 (23%)
LRR 486..>736 CDD:443914 73/260 (28%)
leucine-rich repeat 486..509 CDD:275380 5/22 (23%)
leucine-rich repeat 510..533 CDD:275380 6/22 (27%)
leucine-rich repeat 534..556 CDD:275380 9/22 (41%)
leucine-rich repeat 557..580 CDD:275380 8/24 (33%)
leucine-rich repeat 581..604 CDD:275380 6/22 (27%)
leucine-rich repeat 605..628 CDD:275380 8/28 (29%)
PPP1R42 627..860 CDD:455733 69/240 (29%)
leucine-rich repeat 629..652 CDD:275380 7/24 (29%)
leucine-rich repeat 653..676 CDD:275380 7/22 (32%)
leucine-rich repeat 677..700 CDD:275380 7/22 (32%)
leucine-rich repeat 701..748 CDD:275380 10/48 (21%)
leucine-rich repeat 725..736 CDD:275378 2/10 (20%)
leucine-rich repeat 749..772 CDD:275380 3/22 (14%)
leucine-rich repeat 773..793 CDD:275380 7/19 (37%)
leucine-rich repeat 821..844 CDD:275380 9/22 (41%)
leucine-rich repeat 845..868 CDD:275380 6/22 (27%)
LRR 869..1226 CDD:443914 93/434 (21%)
leucine-rich repeat 869..892 CDD:275380 3/22 (14%)
leucine-rich repeat 893..915 CDD:275380 5/24 (21%)
leucine-rich repeat 916..944 CDD:275380 7/27 (26%)
leucine-rich repeat 945..968 CDD:275380 6/22 (27%)
leucine-rich repeat 969..992 CDD:275380 8/30 (27%)
leucine-rich repeat 993..1014 CDD:275380 5/20 (25%)
leucine-rich repeat 1017..1040 CDD:275380 6/22 (27%)
leucine-rich repeat 1041..1064 CDD:275380 11/52 (21%)
leucine-rich repeat 1089..1114 CDD:275380 6/28 (21%)
leucine-rich repeat 1115..1162 CDD:275380 14/77 (18%)
PPP1R42 1155..1317 CDD:455733 28/163 (17%)
leucine-rich repeat 1163..1186 CDD:275380 0/22 (0%)
leucine-rich repeat 1187..1210 CDD:275380 4/22 (18%)
leucine-rich repeat 1211..1233 CDD:275380 8/23 (35%)
leucine-rich repeat 1234..1257 CDD:275380 3/22 (14%)
leucine-rich repeat 1258..1279 CDD:275380 3/20 (15%)
leucine-rich repeat 1282..1306 CDD:275380 5/23 (22%)
Tlr3NP_569054.2 LRR 3 101..122 5/20 (25%)
leucine-rich repeat 102..125 CDD:275380 5/22 (23%)
LRR 4 125..146 6/20 (30%)
leucine-rich repeat 126..149 CDD:275380 6/22 (27%)
LRR 5 149..170 8/20 (40%)
leucine-rich repeat 150..199 CDD:275380 17/48 (35%)
LRR 6 173..196 8/22 (36%)
LRR 7 199..220 5/20 (25%)
leucine-rich repeat 200..250 CDD:275380 14/52 (27%)
LRR 8 250..271 6/20 (30%)
leucine-rich repeat 251..276 CDD:275380 7/24 (29%)
LRR 9 276..297 6/20 (30%)
leucine-rich repeat 277..300 CDD:275380 7/22 (32%)
LRR 10 300..321 7/20 (35%)
leucine-rich repeat 301..324 CDD:275380 7/22 (32%)
LRR 11 324..345 6/39 (15%)
leucine-rich repeat 325..381 CDD:275380 21/96 (22%)
LRR 12 357..378 7/20 (35%)
LRR 13 381..401 6/19 (32%)
leucine-rich repeat 382..433 CDD:275380 17/50 (34%)
LRR 14 409..430 8/20 (40%)
LRR 15 433..454 8/43 (19%)
leucine-rich repeat 434..458 CDD:275380 9/46 (20%)
LRR 16 458..479 6/20 (30%)
leucine-rich repeat 459..482 CDD:275380 5/24 (21%)
LRR 17 482..502 6/22 (27%)
leucine-rich repeat 483..508 CDD:275380 7/27 (26%)
PPP1R42 503..>649 CDD:455733 37/145 (26%)
LRR 18 508..529 6/20 (30%)
leucine-rich repeat 509..532 CDD:275380 6/22 (27%)
LRR 19 532..553 6/20 (30%)
leucine-rich repeat 533..564 CDD:275380 8/30 (27%)
LRR 20 564..585 5/20 (25%)
leucine-rich repeat 565..586 CDD:275380 5/20 (25%)
LRR 21 588..609 6/20 (30%)
leucine-rich repeat 589..610 CDD:275378 6/20 (30%)
LRR 22 612..633 7/20 (35%)
leucine-rich repeat 613..637 CDD:275380 7/23 (30%)
LRRCT 646..698 CDD:214507 10/51 (20%)
Tlr3_TMD 699..731 CDD:465595 6/31 (19%)
TIR 756..901 CDD:214587 39/231 (17%)
leucine-rich repeat 37..53 CDD:275380 3/29 (10%)
LRR 1 53..74 3/21 (14%)
leucine-rich repeat 54..77 CDD:275380 3/23 (13%)
PLN00113 70..>543 CDD:215061 147/544 (27%)
LRR 2 77..98 5/20 (25%)
leucine-rich repeat 78..101 CDD:275380 5/22 (23%)
Blue background indicates that the domain is not in the aligned region.

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