DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scro and LBX2

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001269359.1 Gene:LBX2 / 85474 HGNCID:15525 Length:198 Species:Homo sapiens


Alignment Length:152 Identity:51/152 - (33%)
Similarity:68/152 - (44%) Gaps:22/152 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 GSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLA--------QRRKRRVLF 260
            |.....|..|:..|.|.:          ..||.|.::..|:....|.|        :|||.|..|
Human    38 GPGPTSPLCALEELTSKT----------FRGLDARALQPSEGRAGPDALGPGPFGRKRRKSRTAF 92

  Fly   261 TQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQ 325
            |..||.||||||..|:||:..||:.||:.:.|...||..||||.|.|.||..:|   ...:..:.
Human    93 TAQQVLELERRFVFQKYLAPSERDGLATRLGLANAQVVTWFQNRRAKLKRDVEE---MRADVASL 154

  Fly   326 PASSPRRVAVPVLVKDGKPCSG 347
            .|.|| .|...:.:.:|.|..|
Human   155 RALSP-EVLCSLALPEGAPDPG 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 29/55 (53%)
LBX2NP_001269359.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 24..46 2/7 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 63..89 6/25 (24%)
Homeodomain 86..142 CDD:459649 29/55 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 173..198 1/3 (33%)

Return to query results.
Submit another query.