DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scro and NKX6-2

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_796374.2 Gene:NKX6-2 / 84504 HGNCID:19321 Length:277 Species:Homo sapiens


Alignment Length:216 Identity:61/216 - (28%)
Similarity:86/216 - (39%) Gaps:60/216 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 TPFSVTDILS-PIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHSPGV 177
            ||..::|||. |:..:...| |.|.|    |.|..:||..                  :|..|..
Human    56 TPHGISDILGRPVGAAGGGL-LGGLP----RLNGLASSAG------------------VYFGPAA 97

  Fly   178 QTYCG-PTDNLSLAGHYTDMRNSASW----YGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAA 237
            ....| |.....|.|     |....|    .|:...|||.|    ..:.|.|.:...|       
Human    98 AVARGYPKPLAELPG-----RPPIFWPGVVQGAPWRDPRLA----GPAPAGGVLDKDG------- 146

  Fly   238 CSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQ 302
                          :::..|..|:..|::.||:.|:|.:||:.|||..||..:.:|.:|||:|||
Human   147 --------------KKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQ 197

  Fly   303 NHRYKC-KRQAKEKAMAEQNQ 322
            |.|.|. ||.|.|.|.|::.|
Human   198 NRRTKWRKRHAVEMASAKKKQ 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 24/56 (43%)
NKX6-2NP_796374.2 Repressor domain. /evidence=ECO:0000250|UniProtKB:D3Z4R4 89..142 15/79 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 132..155 5/47 (11%)
Homeodomain 147..205 CDD:459649 24/57 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 210..250 4/9 (44%)

Return to query results.
Submit another query.