Protein Alignment scro and Hoxa5

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_077365.1
• Gene: Hoxa5 / 79241
• RGDID: 620609
• Length: 381
• Species: Rattus norvegicus
• Alignment Length: 365
• Identity: 82/365 - (22%)
• Similarity: 121/365 - (33%)
• Gaps: 91/365 - (24%)

  Fly    30 TAPNEEDLVMSLSPKDTLIHTAISQHHQVDTSTKLNTNETSTQNTVSTAAAAAVAHHHHNLSSIH 94
            |.|........|.|...|:|...|:.||...:|....:...::.....|.......|...:|.||
  Rat    22 TRPGSARHPSRLHPTPPLLHEFTSRGHQAGFTTGQQKHVIRSRTPYLGAYVGGNRVHVPVISIIH 86

  Fly    95 H--------LQNLHSQHQSTLFNSNHSTPFSVTDIL-----------------SPIEESYRK--- 131
            |        .|...|...||......|:.| |....                 |.:.|.:|.
  Rat    87 HKLCKGAIDAQTTASHKSSTHIKKQMSSYF-VNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSAS 150

  Fly   132 -------LELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGT-------LYHSPGVQTYCG 182
                   ...||...|..||.|        |...:...|..||.|.       .|..|...|:..
  Rat   151 MHSGRYGYGYNGMDLSVGRSGS--------GHFGSGERARSYAAGASAAPAEPRYSQPATSTHSP 207

  Fly   183 PTDNLSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSD----- 242
            |.|.|..:. ......|.|.:|.     :.::.....:||:...:|:.:..|:...|.::
  Rat   208 PPDPLPCSA-VAPSPGSDSHHGG-----KNSLGNSSGASANAGSTHISSREGVGTASAAEEDAPA 266

  Fly   243 --------SKPLQFPLAQ---------------------RRKRRVLFTQAQVYELERRFKQQRYL 278
                    |:|...|.||                     .::.|..:|:.|..|||:.|...|||
  Rat   267 SSEQAGAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYL 331

  Fly   279 SAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMA 318
            :...|..:|..:.|:..|:||||||.|.|.|:..|.|:|:
  Rat   332 TRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMS 371

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	22/55 (40%)
Hoxa5	NP_077365.1	Homeodomain	307..363	CDD:459649	22/55 (40%)