Protein Alignment scro and Hhex

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_077361.1
• Gene: Hhex / 79237
• RGDID: 619932
• Length: 271
• Species: Rattus norvegicus
• Alignment Length: 299
• Identity: 70/299 - (23%)
• Similarity: 117/299 - (39%)
• Gaps: 77/299 - (25%)

  Fly   107 LFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTL 171
            |....|.|||.:.||            |...|.:|    :.:.::.||.:..||.:::
  Rat    24 LLQPAHPTPFYIDDI------------LGRGPAAP----TPTPTLPSPNSSFTSLVSS------- 65

  Fly   172 YHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSASGTMSH--MGNMSG 234
            |.:|..:    ||.......|:.....:|::.......|.:...|.::......:.|  :|
  Rat    66 YRTPVYE----PTPVHPAFSHHPAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLRHDPLG---- 122

  Fly   235 LAACSVSDSKP------LQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLT 293
                     ||      ||.||.:|:..:|.|:..|..|||::|:.|:|||.|||:.||.::.|:
  Rat   123 ---------KPLLWNPFLQRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLS 178

  Fly   294 PTQVKIWFQNHRYKCKRQAKEKAMAEQ------------------NQHNQPASSPRRVAVPVLVK 340
            ..|||.||||.|.|.:|..:|...:.:                  ::.|:.||           .
  Rat   179 ERQVKTWFQNRRAKWRRLKQENPQSNKKDELDSLDTSCDQGQDLPSEQNKGAS-----------L 232

  Fly   341 DGKPCSGNNSSSQSQQHGTNSTSAGNNTGSANNGNANSG 379
            |...||.:.:|.:..:...:..|........:.|..|:|
  Rat   233 DSSQCSPSPASPEDPESEISEDSDQEVDIEGDKGYFNAG 271

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	26/55 (47%)
Hhex	NP_077361.1	Homeodomain	137..195	CDD:459649	27/57 (47%)