Protein Alignment scro and nanog

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001091862.1
• Gene: nanog / 792333
• ZFINID: ZDB-GENE-030131-5486
• Length: 384
• Species: Danio rerio
• Alignment Length: 327
• Identity: 79/327 - (24%)
• Similarity: 123/327 - (37%)
• Gaps: 75/327 - (22%)

  Fly    47 LIHTAISQH-----HQVDTSTKLNTNETSTQNTVSTAAAAAVAHHHHNLSSIHHLQNLHSQHQST 106
            |::..:|:|     ...|.:...:...|:...|..||.:...:..:...||.:.....|||: ..
Zfish    23 LMYPQVSEHGVPNLSWPDAAYTHSGGVTAGYFTAQTAQSPPWSPENGGASSTYSQYPGHSQN-GR 86

  Fly   107 LFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTL 171
            ||                  .||.|.|     |.....::..:|.::|   :.|....|.:..:.
Zfish    87 LF------------------LSYNKTE-----PDQKAKDAEQTSSDTP---SDSEAHTPDSWSSA 125

  Fly   172 YHSPGVQTYCGPTDNLSLAGHYTDMRNSASW----YGSTANDPRFAISRLMSSSASGTMS-HMG- 230
            ....||     |..||:|          .||    |.:.:..|......|.|::....:: ::|
Zfish   126 SSREGV-----PLTNLNL----------PSWRDRDYETDSGSPDSGERNLTSTAGEEPVNLNLGV 175

  Fly   231 -NMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTP 294
             ....|.|.:.|..:|...|    ||.|..|::.|:..|..||..||||:..|.:.||....||.
Zfish   176 DTQPPLPALTASPVRPPTLP----RKTRAAFSEEQMNALVNRFNVQRYLTPAEMKTLAGATGLTY 236

  Fly   295 TQVKIWFQNHRYKCKRQAKEKA-MAEQNQHNQPASSPRRVAVPVLVKDGKPCSGNNSSSQSQQHG 358
            .|||.||||.|.|.||..::.: |.|:...|...::|                .:.|..||:..|
Zfish   237 KQVKTWFQNRRMKLKRHQRDSSWMTERYVVNAVPNTP----------------ASQSQFQSEPPG 285

  Fly   359 TN 360
            .|
Zfish   286 AN 287

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	26/55 (47%)
nanog	NP_001091862.1	Homeodomain	196..252	CDD:459649	26/55 (47%)