DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and lbx1

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001072559.1 Gene:lbx1 / 780014 XenbaseID:XB-GENE-6455157 Length:265 Species:Xenopus tropicalis


Alignment Length:256 Identity:75/256 - (29%)
Similarity:105/256 - (41%) Gaps:59/256 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 NSNHS-TPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLY 172
            |||.. ||||:.|||              |.||..||.:...:.:     ..||...|.|.|.  
 Frog    28 NSNKPLTPFSIEDIL--------------NKPSVRRSYTICGTAH-----LLSTAEKPPAAGL-- 71

  Fly   173 HSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAA 237
                      |..:.:|.               :...|..|:..|.|.:..|.     .:|.|.|
 Frog    72 ----------PLSSRALL---------------SQTSPLCALEELASKTFKGL-----EVSVLQA 106

  Fly   238 CSVSDSKPL----QFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVK 298
            ....|...:    |.| .:|||.|..||..|:||||:||..|:|||..:|:.:|..:.||..||.
 Frog   107 AEGRDGMTIFGQRQTP-KKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVI 170

  Fly   299 IWFQNHRYKCKRQAKE-KAMAEQNQHNQPASSPRRVAVPVLVKDGKPCSGNNSSSQSQQHG 358
            .||||.|.|.||..:| ||..|..:...|::....:.:..|.::..... ::|.|:|.|.|
 Frog   171 TWFQNRRAKLKRDLEEMKADVESVKKMSPSTVEAVLTISELEEETNSVR-DDSRSRSPQLG 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 28/55 (51%)
lbx1NP_001072559.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33 3/4 (75%)
Homeodomain 126..182 CDD:459649 28/55 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..265 5/20 (25%)

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