DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and NKX2-1

DIOPT Version :9

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001073136.1 Gene:NKX2-1 / 7080 HGNCID:11825 Length:401 Species:Homo sapiens


Alignment Length:415 Identity:168/415 - (40%)
Similarity:206/415 - (49%) Gaps:86/415 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 SQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGN----PPSPFRSNSSS--------SSINS 153
            |:.:....:..|:|||||:|||||:||||:|:.:.|.    |.:.:|...::        .::..
Human    26 SRRRIMSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH 90

  Fly   154 PGTLTTSTMANPYAMGTLYHSPGVQTYC-GPTDNLSLAGHYTD-MRNSAS---WYGSTANDPRF- 212
            .|.:|.:.......:..|.|| .|..|| |...|:|....|.| ||||||   |||:.. |||| 
Human    91 HGAVTAAYHMTAAGVPQLSHS-AVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANP-DPRFP 153

  Fly   213 AISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRY 277
            ||||.|..::...||.||.:..|...| .:..||  |.|.||||||||:||||||||||||||:|
Human   154 AISRFMGPASGMNMSGMGGLGSLGDVS-KNMAPL--PSAPRRKRRVLFSQAQVYELERRFKQQKY 215

  Fly   278 LSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQ-----------------NQHNQ 325
            |||||||||||:||||||||||||||||||.|||||:||..:|                 .|...
Human   216 LSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQA 280

  Fly   326 PASSPRRVAVPVLVKDGKPC----------SGNNSSSQSQQHGTNSTSAGNNTGSANNGNANSGI 380
            ...|||||||||||||||||          |....:.|..||...:..|.....|..:|.|    
Human   281 QQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGA---- 341

  Fly   381 VSVTANVSGGLNLITGDAPNS--HSPDTSSSLLASYGTVGGSNVAMLQQPCNNTLMSNSLAMAYR 443
                     ||....|..|.|  .|||     ||.:    .::.|.||...::....||....|.
Human   342 ---------GLGAHPGHQPGSAGQSPD-----LAHH----AASPAALQGQVSSLSHLNSSGSDYG 388

  Fly   444 NQNNFISNGHQQQCGGYLPLQGRAW 468
            ..:          |...  |.||.|
Human   389 TMS----------CSTL--LYGRTW 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeobox 256..309 CDD:278475 49/52 (94%)
NKX2-1NP_001073136.1 Homeobox 194..247 CDD:278475 49/52 (94%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165143182
Domainoid 1 1.000 114 1.000 Domainoid score I6085
eggNOG 1 0.900 - - E2759_KOG0842
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 221 1.000 Inparanoid score I3557
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002967
OrthoInspector 1 1.000 - - otm41843
orthoMCL 1 0.900 - - OOG6_108513
Panther 1 1.100 - - O PTHR24340
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2571
SonicParanoid 1 1.000 - - X524
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1211.780

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