Protein Alignment scro and hoxc13a

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_571618.1
• Gene: hoxc13a / 58059
• ZFINID: ZDB-GENE-000822-4
• Length: 306
• Species: Danio rerio
• Alignment Length: 321
• Identity: 78/321 - (24%)
• Similarity: 116/321 - (36%)
• Gaps: 104/321 - (32%)

  Fly    65 NTNETSTQNTVSTAAAAAVAHHHHNLSSIHHLQNLHS----QHQSTLFNSNHSTPFSVTDILSPI 125
            |.|..:....:...:....|.|...|.| |.....||    .||.:::          :||.||
Zfish    24 NENNQNKSQIMEGLSGNCPATHCRELIS-HPALGRHSGTIATHQGSVY----------SDISSP- 76

  Fly   126 EESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHSPGV---QTYCG----- 182
                   |.....|:|..|:|:|.|...|       ..|||....|.||..|   |..|.
Zfish    77 -------ETGRQCPAPQTSSSASLSYGYP-------FGNPYYGCRLSHSHNVNLQQKPCSYHPAE 127

  Fly   183 ---------PTDNL-----------SLAGH------YTDM------------RNSA--------S 201
                     ||:.|           |||..      |.||            |:.|        .
Zfish   128 KYAETSSALPTEELSSRAKEFAFYPSLASSYQAVPGYLDMSVVPSISVHPEPRHDALIPMEGYQH 192

  Fly   202 WYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLA---QRRKRRVLFTQA 263
            |..|...|.:...|:..:.|     ||      |......|..|||..::   :.||:||.:|:.
Zfish   193 WALSNGWDGQVYCSKEQTQS-----SH------LWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKI 246

  Fly   264 QVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHN 324
            |:.|||:.:...::::..:|..:::..:|:..||.|||||      |:.|||....:::.|
Zfish   247 QLKELEKEYAASKFITKDKRRRISATTNLSERQVTIWFQN------RRVKEKKFVSKSKTN 301

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	18/55 (33%)
hoxc13a	NP_571618.1	HoxA13_N	34..144	CDD:463521	33/135 (24%)
		Homeodomain	237..293	CDD:459649	21/61 (34%)