Protein Alignment scro and hoxc6b

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: XP_073772180.1
• Gene: hoxc6b / 58045
• ZFINID: ZDB-GENE-000822-1
• Length: 228
• Species: Danio rerio
• Alignment Length: 215
• Identity: 55/215 - (25%)
• Similarity: 86/215 - (40%)
• Gaps: 44/215 - (20%)

  Fly   113 STPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGT--LYHSP 175
            ||.:......||...:..:..:..|   ||.|:..:....|         :.||..|:  .|...
Zfish    28 STNYDPVRHFSPYGAAVAQNRIYSN---PFYSHQENVMFGS---------SRPYEYGSNMFYQDK 80

  Fly   176 GVQTYC----GPTDNLSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLA 236
            .|...|    |.|.. ||...|      ||..|.|. :|:.::      .....|..|.:.||:.
Zfish    81 DVLPSCRQGFGQTQG-SLTQDY------ASDQGKTM-EPKGSV------QIYPWMQRMNSHSGVG 131

  Fly   237 ACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWF 301
            ..|            .||:.|.::::.|..|||:.|...|||:...|..:|:.:.|:..|:||||
Zfish   132 YGS------------DRRRGRQIYSRYQTLELEKEFHYNRYLTRRRRIEIANTLCLSERQIKIWF 184

  Fly   302 QNHRYKCKRQAKEKAMAEQN 321
            ||.|.|.|:::...::...|
Zfish   185 QNRRMKWKKESNLTSILNDN 204

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	22/55 (40%)
hoxc6b	XP_073772180.1	None