DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and hoxc11b

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_009298848.2 Gene:hoxc11b / 570925 ZFINID:ZDB-GENE-000822-3 Length:306 Species:Danio rerio


Alignment Length:319 Identity:73/319 - (22%)
Similarity:117/319 - (36%) Gaps:99/319 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 RELQINRDQYFVTAPNEEDLVMSLSPKDTLIHTAISQHHQVDTSTKLNTNETSTQNTVSTAAAAA 82
            |::..:....|...|...||...|:|                                     :.
Zfish    56 RQITYSYSTNFTQVPQVRDLPFELNP-------------------------------------SG 83

  Fly    83 VAHHHHNLSSIHHLQNLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSS 147
            ..||..|.||.:..::|  .|:..|..|     .::|::|...|..|     |.:...|      
Zfish    84 KWHHRGNYSSCYAEEDL--VHRDCLPPS-----ATMTEMLMKNENVY-----NHHHYHP------ 130

  Fly   148 SSSINSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLA-GHYTDMRNSASWYGSTAN--- 208
              :||.|||                   |..:..|.|:.|..: ..:.|..:|.:..||..|   
Zfish   131 --AINHPGT-------------------GFYSSIGKTNVLPQSFDRFLDCAHSGADGGSEGNCLQ 174

  Fly   209 -----DPRFA--ISRLMSSSASG----------TMSHMGNMSGLAACSVSDSKPLQFPLAQRRKR 256
                 .|..|  :|.::.|:|.|          |.......||....:.:.|.....|  :.||:
Zfish   175 KGSSGKPESASQVSSVLRSTADGEKELECEKNTTSGSFETSSGTKNDNQTKSGHSTTP--RMRKK 237

  Fly   257 RVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEK 315
            |..:|:.|:.||||.|....|::..:|..|:.:::||..||||||||.|.|.|:.::::
Zfish   238 RCPYTKFQIRELEREFFFNVYINKEKRLQLSRILNLTDRQVKIWFQNRRMKEKKLSRDR 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 25/55 (45%)
hoxc11bXP_009298848.2 None

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