Protein Alignment scro and hoxc12a

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001104229.1
• Gene: hoxc12a / 562600
• ZFINID: ZDB-GENE-000822-6
• Length: 274
• Species: Danio rerio
• Alignment Length: 223
• Identity: 61/223 - (27%)
• Similarity: 91/223 - (40%)
• Gaps: 51/223 - (22%)

  Fly   135 NGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLA--------- 190
            ||.|.|.|   ||..|||.  :...|...........|:.....|....:||.||.
Zfish    62 NGYPQSYF---SSPVSINP--SFNRSCEITRLEESKCYYGNSSSTRDSCSDNNSLKREERARDTS 121

  Fly   191 -----GHYTDMRNSASW----YGS--TANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSK 244
                 |.:..|.||.::    ||:  ...||. :...|.|.|:|..::..|.      .|.||.:
Zfish   122 VSSDHGMHNGMGNSGTFSKYDYGTEHLTQDPP-SCQSLESDSSSSVLNEGGK------TSASDPQ 179

  Fly   245 PL-----------------QFPLAQR-RKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIH 291
            .|                 .:|:..| ||:|..:::.|:.|||..|....:::...|..|:..::
Zfish   180 TLVSQGNHASNIAGGGGAPWYPMHTRTRKKRKPYSKLQLAELEGEFMLNEFITRQRRRELSDRLN 244

  Fly   292 LTPTQVKIWFQNHRYKCKR-QAKEKAMA 318
            |:..||||||||.|.|.|| ..:|:|::
Zfish   245 LSDQQVKIWFQNRRMKKKRLLLREQALS 272

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	21/55 (38%)
hoxc12a	NP_001104229.1	Homeodomain	207..263	CDD:459649	21/55 (38%)