Protein Alignment scro and hoxb13a

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001038377.1
• Gene: hoxb13a / 559921
• ZFINID: ZDB-GENE-050812-1
• Length: 303
• Species: Danio rerio
• Alignment Length: 299
• Identity: 62/299 - (20%)
• Similarity: 122/299 - (40%)
• Gaps: 81/299 - (27%)

  Fly    44 KDTLIHTAISQHHQ----------VDTSTKLNTNETSTQ----NTVSTAAAAAVAHHHHNLSSIH 94
            ::.:.|:|:|.|..          ||.||. ::.|:..|    .||..|::.....:.:..:|.:
Zfish    44 RNLMAHSALSGHPSSLVHGSSYPTVDVSTS-SSAESGKQCTPCPTVPQASSTGPIPYGYFGNSYY 107

  Fly    95 HLQ----NLHSQHQSTLFNSNHSTPFSVTDILSPIEESY----RKLELNGNPPSPFRSNSSSSSI 151
            ..:    :|.|..|.:.. |..:..:..|.:.|   |.|    ::.....:.|||::|.:|...:
Zfish   108 PCRMGRGSLKSCTQPSAL-SYTAEKYMDTPVTS---EEYPTRAKEFAFYHSYPSPYQSMASYLDV 168

  Fly   152 NSPGTLTTSTMAN----------PYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGST 206
            :...||.|....:          |:|:...:   |.|.||  :.:...|||.        |
Zfish   169 SVVQTLGTGEPRHDSLLPMDSYQPWALANGW---GSQMYC--SKDQGQAGHL--------W---- 216

  Fly   207 ANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERR 271
                :.|::.:::....|.....|                       ||:|:.:|:.|:.|||:.
Zfish   217 ----KSALADVVAHQHDGGSFRRG-----------------------RKKRIPYTKVQLKELEKE 254

  Fly   272 FKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKR 310
            :...::::..:|..::::.:|:..|:.|||||.|.|.|:
Zfish   255 YAANKFITKDKRRKISAVTNLSERQITIWFQNRRVKEKK 293

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	18/55 (33%)
hoxb13a	NP_001038377.1	HoxA13_N	27..145	CDD:463521	22/105 (21%)
		Homeodomain	237..293	CDD:459649	18/55 (33%)