DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and hoxd1

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001016678.1 Gene:hoxd1 / 549432 XenbaseID:XB-GENE-482731 Length:301 Species:Xenopus tropicalis


Alignment Length:262 Identity:70/262 - (26%)
Similarity:95/262 - (36%) Gaps:83/262 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 LHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPP---SPFRSNSSSSSINSPGTLTTS 160
            |||......:.|||.           :||:      .|:.|   |.|..| .|..:|  |.|:..
 Frog    84 LHSSTDYDYYGSNHL-----------VEET------GGHIPYGSSVFPGN-GSYILN--GQLSYR 128

  Fly   161 TMANP---------------YAMGTLYH-SPGVQTYCGPTDNLSLAGHYTDMRNSA-SWYGSTAN 208
            |:...               |..|.|.. ||...||..|      |...:|...|. .|.....|
 Frog   129 TLGEETQMAQIAQCKEPLEVYPGGNLQSISPSPGTYPKP------ASPASDTHVSTFDWMKVKRN 187

  Fly   209 DPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFK 273
            .|:.::     .|..|..|        ..|:|                |..||..|:.|||:.|.
 Frog   188 PPKKSL-----QSEYGVAS--------PPCTV----------------RTNFTTKQLTELEKEFH 223

  Fly   274 QQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRRVAVPVL 338
            ..:||:...|..:|:.:.|..|||||||||.|.|.|::.:|.::.     |.|.|.|   |..:.
 Frog   224 FNKYLTRARRIEIANSLQLNDTQVKIWFQNRRMKQKKREREGSLP-----NSPPSGP---ASSIC 280

  Fly   339 VK 340
            ||
 Frog   281 VK 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 24/55 (44%)
hoxd1NP_001016678.1 Antp-type hexapeptide. /evidence=ECO:0000255 178..183 1/4 (25%)
Homeodomain 207..260 CDD:459649 24/52 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 255..301 11/36 (31%)

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