DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and Dbx2

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001418946.1 Gene:Dbx2 / 541457 RGDID:1359605 Length:377 Species:Rattus norvegicus


Alignment Length:165 Identity:47/165 - (28%)
Similarity:69/165 - (41%) Gaps:25/165 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   236 AACSVSDSKPLQFPLAQRRK--------------------RRVLFTQAQVYELERRFKQQRYLSA 280
            |.|..|..:|.. |.|..|:                    ||.:|::.|...||:.|::|:|:|.
  Rat   190 ACCGGSCRRPAS-PTAFSREEHGLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISK 253

  Fly   281 PEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRRVAVPVLVKDGKPC 345
            .:|..||..:.|..:||||||||.|.|. |.:|||.:.......:.:....|:|.|..   |.|.
  Rat   254 TDRRKLAISLGLKESQVKIWFQNRRMKW-RNSKEKEVLSNRCLQEVSLQEDRLAQPAA---GCPP 314

  Fly   346 SGNNSSSQSQQHGTNSTSAGNNTGSANNGNANSGI 380
            ...:....||.|.:.|....:..........|||:
  Rat   315 QCPSVWEVSQPHSSPSWREESPESVERLSQENSGV 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 25/75 (33%)
Dbx2NP_001418946.1 PHA03247 <39..186 CDD:223021
Homeodomain 229..283 CDD:459649 24/54 (44%)
Blue background indicates that the domain is not in the aligned region.

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