DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and HGTX

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster


Alignment Length:378 Identity:95/378 - (25%)
Similarity:143/378 - (37%) Gaps:101/378 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 NETSTQNTVSTAAAAAVAHHHHNLS--SIHHLQNLHSQHQSTLFNSNHSTPFSVTDILSP----- 124
            |:.|.:|..|..|.   ..|||.::  ::|:..  |:.:.....|:||.........|.|     
  Fly   241 NDYSPENLSSQRAK---FQHHHGVNPLALHNAN--HAGNPGCHNNNNHMDHKLPLSFLGPPLAAL 300

  Fly   125 --------------IEESYRKLELNGNPPSPFRSN-SSSSSINSPGTLTTSTMA----NPYAMGT 170
                          ...|...|..:.:|.|...|: .|..|.:|..|.||:|.:    ||:.:.|
  Fly   301 HSMTTEMKGQGVGGSSASANGLSYSHSPNSHLISDRGSGGSSSSSSTTTTNTNSQGAPNPHGIDT 365

  Fly   171 LYHSP--------------------------GVQTYCGPTDNLSL---AGHYTDMRNSASW---Y 203
            :...|                          |:..|...:....|   |||..| |....|   .
  Fly   366 ILSKPPPVTSAGLSALTGAGIPRFSIAAAAAGMAQYLSQSQGAPLKTHAGHIVD-RTHLYWPGLQ 429

  Fly   204 GSTANDP---RFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQV 265
            |..|| |   |..:|..||::.|  .||..:.|     :..|.|        ::..|..|:..|:
  Fly   430 GLVAN-PIAWRERLSNTMSANLS--QSHQHHPS-----NDKDGK--------KKHTRPTFSGQQI 478

  Fly   266 YELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKC-KRQAKEKAMAEQNQHNQPASS 329
            :.||:.|:|.:||:.|||..||..:.::.:|||:||||.|.|. ||.|.|.|.|::.|.:....:
  Fly   479 FALEKTFEQTKYLAGPERAKLAYALGMSESQVKVWFQNRRTKWRKRHAAEMATAKRKQDDMGGDN 543

  Fly   330 PRRVAVPVLVKDGKPC-----SGNNSSSQSQQHGTNSTSAGNNTGSANNGNAN 377
                       || .|     |.|.|....:....|.....|::||:.....|
  Fly   544 -----------DG-DCSETMDSDNESLDMGESPAQNKRCRSNSSGSSQQQQDN 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 23/56 (41%)
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709 31/151 (21%)
Homeodomain 465..523 CDD:459649 24/65 (37%)

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