Protein Alignment scro and Noto

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001178943.1
• Gene: Noto / 502857
• RGDID: 1562910
• Length: 245
• Species: Rattus norvegicus
• Alignment Length: 247
• Identity: 66/247 - (26%)
• Similarity: 99/247 - (40%)
• Gaps: 65/247 - (26%)

  Fly   140 SPFRSNSSSSSINSPGTL------TTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRN 198
            ||....:||.:...||.|      .:..:.|..|.|.|..|..|:..        ||...|...:
  Rat     3 SPVPQPASSGTQVQPGDLGPCPVAVSPVVPNHLARGRLESSFSVEAI--------LARPETREHS 59

  Fly   199 SASWYGSTANDPRF-AISR---LMSSSASGT------------MSHMGNMSGLAACSVSDSKPLQ 247
            :.|...||.....| ::|:   |....::||            |..|..|.||....:...:.|:
  Rat    60 ATSLPLSTCTSLNFGSVSQYQVLPWVCSTGTWLPTYLSVGIYPMCSMSCMPGLNVTHLFCQQGLR 124

  Fly   248 F----------PL------------AQRRKRRV--LFTQAQVYELERRFKQQRYLSAPEREHLAS 288
            .          ||            .:|.::||  :|::.|:.|||:.|.:|..|...||..||:
  Rat   125 LTGSELPSCLGPLKRAPTVNLQDHNTERHQKRVRTMFSEQQLGELEKVFAKQHNLVGKERAQLAA 189

  Fly   289 LIHLTPTQVKIWFQNHRYKCKRQAKEKA-----------MAEQNQHNQPASS 329
            .:|||..||:|||||.|.|.::|.|.|:           .:|.|..|:.|.:
  Rat   190 RLHLTENQVRIWFQNRRVKYQKQQKLKSPPPDAMEEPSNSSEGNVRNEDAEA 241

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	26/57 (46%)
Noto	NP_001178943.1	Homeodomain	155..211	CDD:459649	26/55 (47%)