DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and E5

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_524825.1 Gene:E5 / 45396 FlyBaseID:FBgn0008646 Length:524 Species:Drosophila melanogaster


Alignment Length:402 Identity:86/402 - (21%)
Similarity:140/402 - (34%) Gaps:125/402 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 VTAPNEEDLVMSLSPKDTLIHTAISQHHQVDTSTKLNTNETSTQNTVSTAAAA---------AVA 84
            ||...:...::.::|....:.::        :|...::...|..:|||.:|::         ::.
  Fly     2 VTCGRQTFNMLPMAPTSPFVSSS--------SSVAASSTSVSASSTVSASASSKPKLAFSIDSIV 58

  Fly    85 HHHHNLS-----SIHHLQNLHSQHQSTLFNSNHS---TPFSV-----TDIL--------SPIEES 128
            ......|     |:.......|:..::..|:|:|   ||...     .|.|        ||:..|
  Fly    59 GESSTRSAPLRVSVISSPPPRSESPASPTNTNNSGRRTPRGYIYCRRRDSLDRSRSPQRSPVSRS 123

  Fly   129 YRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHY 193
            .......|||.:  ..|::.|...|.||....|:..|..:              |..||:|.|:.
  Fly   124 PSPPNAGGNPAA--AGNTAKSGDPSSGTGNPPTLIRPLPL--------------PAPNLALIGNR 172

  Fly   194 TDMRNSASWYGS----TANDPRFAISRLMSSSA------------------------SGTMSHM- 229
            |.....|.....    .:..|.|..::...::|                        .|...|: 
  Fly   173 TSPNAMAVRMAGPPHPPSQPPPFLAAQFQMAAALAHHHQQQQQQQQQQLPPVPTGPPHGPHPHLP 237

  Fly   230 -GNMS---------------------GLAACSVSDSKPL-------------QFP---LAQ--RR 254
             |.:.                     |.|...:.||.||             :||   |.|  |:
  Fly   238 PGQIPLGIFPGGPHPGHPPPHGHHPFGSAPHLIRDSYPLYPWLLSRHGRIFPRFPGNFLFQPFRK 302

  Fly   255 KRRV--LFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAM 317
            .:||  .|:..|:.:||..|:...|:...||:.||..:.||.||||:||||.|.|.||..:|...
  Fly   303 PKRVRTAFSPTQLLKLEHAFEGNHYVVGAERKQLAQGLSLTETQVKVWFQNRRTKHKRMQQEGGD 367

  Fly   318 AEQNQHNQPASS 329
            ....:.|:.:||
  Fly   368 GSDTKSNKGSSS 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 24/57 (42%)
E5NP_524825.1 Homeodomain 304..360 CDD:459649 24/55 (44%)

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