DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and MSX1

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_002439.2 Gene:MSX1 / 4487 HGNCID:7391 Length:303 Species:Homo sapiens


Alignment Length:206 Identity:55/206 - (26%)
Similarity:84/206 - (40%) Gaps:49/206 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 SNHSTPFSVTDILSP---IEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTL 171
            ::|..|.:....|:|   ::.:....:..|.||         .|:.:|...::......:::|.|
Human    68 ADHRKPGAKESALAPSEGVQAAGGSAQPLGVPP---------GSLGAPDAPSSPRPLGHFSVGGL 123

  Fly   172 YHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTANDPRFA--ISRLMSSSASGTMSHMGNMSG 234
            ...|         ::..:.....:......|..|    |||:  .:|.:|..|.....|..|   
Human   124 LKLP---------EDALVKAESPEKPERTPWMQS----PRFSPPPARRLSPPACTLRKHKTN--- 172

  Fly   235 LAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKI 299
                               ||.|..||.||:..|||:|:|::|||..||...:|.:.||.|||||
Human   173 -------------------RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKI 218

  Fly   300 WFQNHRYKCKR 310
            ||||.|.|.||
Human   219 WFQNRRAKAKR 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 31/55 (56%)
MSX1NP_002439.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..55
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 69..117 9/56 (16%)
PTZ00449 <105..>248 CDD:185628 47/160 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 133..174 10/66 (15%)
Homeodomain 173..229 CDD:459649 31/55 (56%)
Blue background indicates that the domain is not in the aligned region.

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