DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and lbl

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster


Alignment Length:109 Identity:21/109 - (19%)
Similarity:39/109 - (35%) Gaps:33/109 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 LLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRA-LHMFD-----------------------EMP 110
            :|..::..|.||:.:.   :...||......|| :..:|                       :.|
  Fly     9 ILKPQSSVRCVPSRLA---IERLFGVAAAAFRASVQQYDIRPLNLPLAGTVGTNTSNAGPVPKSP 70

  Fly   111 QYRCQRTVKSLNSLLSALLKCGELEKMKERLSSIDEFGKPDACT 154
            :||..|||.......:|::      |.|:.|:.:.|..:.:..|
  Fly    71 EYRVHRTVPYRTYASAAII------KKKKMLAKLTEAQRTELLT 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649
lblNP_001262805.1 COG5576 206..332 CDD:227863
Homeodomain 252..308 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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