Protein Alignment scro and Scr

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Alignment Length: 436
• Identity: 109/436 - (25%)
• Similarity: 160/436 - (36%)
• Gaps: 81/436 - (18%)

  Fly    64 LNTNETSTQNTVSTAAAAAVAHHHHNLSSIHHLQNLHSQHQSTLFNSNHSTPFSVTDILSP---- 124
            |...:...|...:.||||..|.....|:...|.|....|.|     :|.|..:: .|.::|
  Fly   122 LQQQQQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQQQQ-----ANISCKYA-NDPVTPGGSG 180

  Fly   125 ---IEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPT-D 185
               :..|      |.|..|...:|::|.|:.||..|:|..::...:..::..|.......|.. .
  Fly   181 GGGVSGS------NNNNNSANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGG 239

  Fly   186 NLSLAGHYTDMRNSASWYG-----STANDPRFAISRLMSSSASG---TMSHMGNMSGLAACSVSD 242
            :|:.|.....:.|:.|..|     ...|.|       |.|...|   :.|..||.:|.:..|.:.
  Fly   240 SLAAAAAAAGLNNNHSGSGVSGGPGNVNVP-------MHSPGGGDSDSESDSGNEAGSSQNSGNG 297

  Fly   243 SK--PLQFPLAQR--------------RKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIH 291
            .|  |..:|..:|              :::|..:|:.|..|||:.|...|||:...|..:|..:.
  Fly   298 KKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 362

  Fly   292 LTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRR-------VAVPVLVKDGKPCSGN- 348
            ||..|:||||||.|.|.|::.|..:|.....|..|...|..       ....:...|....||.
  Fly   363 LTERQIKIWFQNRRMKWKKEHKMASMNIVPYHMGPYGHPYHQFDIHPSQFAHLSAXDAWHFSGTG 427

  Fly   349 ---NSSSQSQQHGTNSTSAGNNTGSANNGNANSGIVSVTAN-------VSGGLNLITGDAPNSHS 403
               |...|.......:.||.:...|.:.|....|.|.|...       .:||.|   |..|||..
  Fly   428 XRLNQLYQEPYQTAAAASAASGYQSQDGGPIGGGSVGVGGGAGGPGSLANGGSN---GSGPNSLF 489

  Fly   404 PDTSSSLLA----SYGTVGGSNVAMLQQPCNNTLMSNSLAMAYRNQ 445
            ...:||..|    .|.....|.|.:.||  :.....||:.   |||
  Fly   490 ASAASSSQAPDCIKYPQEFXSQVIIRQQ--HQQQQDNSMD---RNQ 530

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	23/55 (42%)
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	23/55 (42%)