Protein Alignment scro and cdx4

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_989417.1
• Gene: cdx4 / 395056
• XenbaseID: XB-GENE-482787
• Length: 260
• Species: Xenopus tropicalis
• Alignment Length: 291
• Identity: 68/291 - (23%)
• Similarity: 113/291 - (38%)
• Gaps: 76/291 - (26%)

  Fly    61 STKLNTNETSTQNTVSTAAAAAVAHHHHNLSSIHHLQNLHSQHQST-LFNSNHSTPFSVTDILSP 124
            |.:..:|..|.||..|.       ..:.|..:.||:..:..|.|.. ::...:.:|
 Frog    20 SVRSASNNHSAQNYASN-------QPYFNYVTYHHVPPMDEQGQPCGVWGPQYGSP--------- 68

  Fly   125 IEESYRKLELNGNPPSPFRSNSSSSSINSPG--TLTTSTMANPYAMGT-LYHSPGV-QTYCGPTD 185
                  :.:.|.....|..:|.:.||..||.  ...:|..::|:..|| :.||..: .|......
 Frog    69 ------REQWNSYGAGPSNTNMAQSSDLSPNQFAYNSSGYSSPHPSGTGILHSVDLSHTAANSPS 127

  Fly   186 NLSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPL 250
            :||        :||..|.|.|          :.|:|...|.:
 Frog   128 DLS--------QNSYEWMGKT----------VQSTSTGKTRT----------------------- 151

  Fly   251 AQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEK 315
              :.|.||::|..|..|||:.|...||::...:..||:.:.|:..||||||||.|.| :|:..:|
 Frog   152 --KEKYRVVYTDHQRLELEKEFHYSRYITIRRKTELAASLRLSERQVKIWFQNRRAK-ERKLFKK 213

  Fly   316 AMAEQN-----QHNQPASSPRRVAVPVLVKD 341
            .|.:.:     |.:..::||..:...|:..|
 Frog   214 KMNQFDGICSVQSDSSSASPNPLCDSVVHTD 244

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	24/55 (44%)
cdx4	NP_989417.1	Caudal_act	16..147	CDD:461413	35/166 (21%)
		Homeodomain	154..209	CDD:459649	24/55 (44%)