Protein Alignment scro and Hoxc9

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001094377.1
• Gene: Hoxc9 / 368178
• RGDID: 1595784
• Length: 260
• Species: Rattus norvegicus
• Alignment Length: 149
• Identity: 51/149 - (34%)
• Similarity: 67/149 - (44%)
• Gaps: 14/149 - (9%)

  Fly   175 PGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACS 239
            ||.:..|||.|..|    |.|.     .|||.......|...|.|..|...   .|:........
  Rat   124 PGRRADCGPGDGRS----YPDY-----MYGSPGELRDRAPQTLPSPEADAL---AGSKHKEEKAD 176

  Fly   240 VSDSKPLQFPLAQR--RKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQ 302
            :..|.|:...:..|  ||:|..:|:.|..|||:.|....||:...|..:|.:::||..|||||||
  Rat   177 LDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQ 241

  Fly   303 NHRYKCKRQAKEKAMAEQN 321
            |.|.|.|:..|||...||:
  Rat   242 NRRMKMKKMNKEKTDKEQS 260

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	25/55 (45%)
Hoxc9	NP_001094377.1	Hox9_act	1..179	CDD:461369	17/66 (26%)
		Homeodomain	193..241	CDD:459649	20/47 (43%)