Protein Alignment scro and Gsx2

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001131035.2
• Gene: Gsx2 / 364140
• RGDID: 1308047
• Length: 305
• Species: Rattus norvegicus
• Alignment Length: 241
• Identity: 58/241 - (24%)
• Similarity: 82/241 - (34%)
• Gaps: 96/241 - (39%)

  Fly    84 AHHHHNLSSIHHLQNLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSS 148
            |||||     |..|:.|..||                                 |..| .|.:::
  Rat   125 AHHHH-----HAPQHHHHHHQ---------------------------------PQQP-GSAAAA 150

  Fly   149 SSINSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTD-NLSLAGHYTDMRNSASWYGSTANDPRF 212
            ::..:......:.:.:|.     :|:|    .|..|. |:|                    |||
  Rat   151 AAAAAAAAAAAAALGHPQ-----HHAP----VCAATTYNVS--------------------DPR- 185

  Fly   213 AISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRY 277
                         ..|...|.|.....|.:.|          :.|..||..|:.||||.|....|
  Rat   186 -------------RFHCLTMGGSDTSQVPNGK----------RMRTAFTSTQLLELEREFSSNMY 227

  Fly   278 LSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQH 323
            ||...|..:|:.::|:..||||||||.|.|.|::.|.   |.:|.|
  Rat   228 LSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKG---ASRNNH 270

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	25/55 (45%)
Gsx2	NP_001131035.2	Homeodomain	204..260	CDD:459649	26/65 (40%)