DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and HOXD3

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_008829.3 Gene:HOXD3 / 3232 HGNCID:5137 Length:432 Species:Homo sapiens


Alignment Length:396 Identity:102/396 - (25%)
Similarity:142/396 - (35%) Gaps:108/396 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 PFSVTDILS--PIE-ESYRKLELNGNPPSPFRSNSSSS-------SINS----------PGTLTT 159
            |.|...|.|  |:. .:::..||||:...|...||...       .:||          |.||..
Human    64 PGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLPP 128

  Fly   160 STMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSASG 224
            |:..|| ..|.    |..:...||..:.|.|   |..:....|               |..|...
Human   129 SSPTNP-GGGV----PAKKPKGGPNASSSSA---TISKQIFPW---------------MKESRQN 170

  Fly   225 TMSHMGNMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASL 289
              |...|....|..|..|..|   |....::.|..:|.||:.|||:.|...|||..|.|..:|:|
Human   171 --SKQKNSCATAGESCEDKSP---PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANL 230

  Fly   290 IHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRR----------VA-------VPV 337
            ::||..|:||||||.|.|.|:..|.|.:.    |:..:.||.|          ||       ||.
Human   231 LNLTERQIKIWFQNRRMKYKKDQKAKGIL----HSPASQSPERSPPLGGAAGHVAYSGQLPPVPG 291

  Fly   338 LVKDGKPCSGNNSSSQSQQHGTNSTSAGNNT----------------GSANNGNANSGIVSVTAN 386
            |..|. |.....:.||...:|..:.:|..::                ..|:||   .|..|  ||
Human   292 LAYDA-PSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNG---GGFAS--AN 350

  Fly   387 VSGGLNLITGDAPNSHSPDTSSSLLASYGTVGGSNVAMLQQPCNNTLMSNSLAMAYRNQNNFISN 451
            :.|....:.|:...|.:|        :.|.|  .|:..|..|       :|.::.|........|
Human   351 LQGSPVYVGGNFVESMAP--------ASGPV--FNLGHLSHP-------SSASVDYSCAAQIPGN 398

  Fly   452 GHQQQC 457
            .|...|
Human   399 HHHGPC 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 26/55 (47%)
HOXD3NP_008829.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 43..62
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 68..197 35/156 (22%)
Antp-type hexapeptide 160..165 1/19 (5%)
Homeodomain 195..251 CDD:459649 26/55 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 253..280 6/30 (20%)
DUF4074 369..430 CDD:463833 10/45 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 400..432 2/5 (40%)
Blue background indicates that the domain is not in the aligned region.

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