DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and HOXB9

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_076922.1 Gene:HOXB9 / 3219 HGNCID:5120 Length:250 Species:Homo sapiens


Alignment Length:236 Identity:62/236 - (26%)
Similarity:88/236 - (37%) Gaps:62/236 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 HHHHNLSSIHHLQNLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSS 149
            |...:|.|::|                   |:.....:.|.|..|.:..|.   |:| |..:   
Human    69 HASGSLPSVYH-------------------PYIQPQGVPPAESRYLRTWLE---PAP-RGEA--- 107

  Fly   150 SINSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSL---AGHYTDMRNSASWYGSTANDPR 211
               :||....:..|.|     |..:||.....| |...||   ||....:.|....||.      
Human   108 ---APGQGQAAVKAEP-----LLGAPGELLKQG-TPEYSLETSAGREAVLSNQRPGYGD------ 157

  Fly   212 FAISRLMSSSASGTMSHMGNMSG--LAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQ 274
               :::...|.........|.|.  |.|.|             .||:|..:|:.|..|||:.|..
Human   158 ---NKICEGSEDKERPDQTNPSANWLHARS-------------SRKKRCPYTKYQTLELEKEFLF 206

  Fly   275 QRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEK 315
            ..||:...|..:|.|::|:..||||||||.|.|.|:..||:
Human   207 NMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQ 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 25/55 (45%)
HOXB9NP_076922.1 Hox9_act 1..172 CDD:461369 29/146 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 21..47
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 149..182 7/41 (17%)
Homeodomain 186..242 CDD:459649 25/55 (45%)
Blue background indicates that the domain is not in the aligned region.

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