DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and HOXB2

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_002136.1 Gene:HOXB2 / 3212 HGNCID:5113 Length:356 Species:Homo sapiens


Alignment Length:261 Identity:68/261 - (26%)
Similarity:93/261 - (35%) Gaps:57/261 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 NLHSQHQSTLFNSNHSTPFSVTD---ILSPIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTT 159
            |...:.:....||..|....:|.   :|...:.|..|......||.||.....|.   .||   .
Human     2 NFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSL---QPG---A 60

  Fly   160 STMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDM-----RNSASWYGSTANDPRFAISRLMS 219
            ||:..|.:.......|.:..  .|...|..|....:.     :.||.....:|..|..|.|.:.:
Human    61 STLQRPRSQKRAEDGPALPP--PPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPA 123

  Fly   220 SSASGTMSHMG--NMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPE 282
            |........:|  ...|..|                |:.|..:|..|:.|||:.|...:||..|.
Human   124 SGVGSPADGLGLPEAGGGGA----------------RRLRTAYTNTQLLELEKEFHFNKYLCRPR 172

  Fly   283 REHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRRVAVPVLVKDGKP-CS 346
            |..:|:|:.||..|||:||||.|.|.||         |.||.:|             .||:| |.
Human   173 RVEIAALLDLTERQVKVWFQNRRMKHKR---------QTQHREP-------------PDGEPACP 215

  Fly   347 G 347
            |
Human   216 G 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 25/55 (45%)
HOXB2NP_002136.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 39..142 23/110 (21%)
Antp-type hexapeptide 94..99 0/4 (0%)
Homeodomain 144..200 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 197..240 12/42 (29%)

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