DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and HOXA3

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_109377.1 Gene:HOXA3 / 3200 HGNCID:5104 Length:443 Species:Homo sapiens


Alignment Length:383 Identity:98/383 - (25%)
Similarity:137/383 - (35%) Gaps:122/383 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 PPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASW 202
            ||.|..::...::.|:|      |.||. |...|.:||.|.....|                  |
Human   119 PPPPSSASPPQNASNNP------TPANA-AKSPLLNSPTVAKQIFP------------------W 158

  Fly   203 YGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYE 267
                ..:.|....:..|||:||           .:|:...|.|.|   |..::.|..:|.||:.|
Human   159 ----MKESRQNTKQKTSSSSSG-----------ESCAGDKSPPGQ---ASSKRARTAYTSAQLVE 205

  Fly   268 LERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRR 332
            ||:.|...|||..|.|..:|:|::||..|:||||||.|.|.|:..|.|.|...:....|:.||  
Human   206 LEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSP-- 268

  Fly   333 VAVP-----------VLVKD-----------GKPCSGNNSSSQSQQHGTNSTSAGNNTGSANNGN 375
              ||           .||..           .||..|......:....:..:.|...........
Human   269 --VPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTA 331

  Fly   376 ANSGIVSVTANVSGGLNLITGD-APNSHSPDTSSSLLASYGT---------VGGSNVAMLQQPCN 430
            |.:|        :||    |.| .|::|....:    .||||         ||||.|    :|.:
Human   332 AGAG--------AGG----TPDYDPHAHGLQGN----GSYGTPHIQGSPVFVGGSYV----EPMS 376

  Fly   431 NT----------LMSNSLAMAYRNQNNFISNGHQQQCG------------GYLPLQGR 466
            |:          ..:.|.||.|..... :.:||....|            |:.|.|||
Human   377 NSGPALFGLTHLPHAASGAMDYGGAGP-LGSGHHHGPGPGEPHPTYTDLTGHHPSQGR 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 26/55 (47%)
HOXA3NP_109377.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 75..147 10/34 (29%)
Antp-type hexapeptide 155..160 2/26 (8%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..196 11/50 (22%)
Homeodomain 192..248 CDD:459649 26/55 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 247..338 17/102 (17%)
DUF4074 377..441 CDD:463833 13/58 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 400..443 8/35 (23%)

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