DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and HOXA1

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_005513.2 Gene:HOXA1 / 3198 HGNCID:5099 Length:335 Species:Homo sapiens


Alignment Length:385 Identity:87/385 - (22%)
Similarity:132/385 - (34%) Gaps:119/385 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 VMSLSPKDTLIHTAISQHHQVDT--STKLNTNETSTQNTVSTAAAAAVA---HHHHNLSSIHHLQ 97
            ::|.....|....|....|::.|  |..::.|.....:.........:.   ||||:    ||..
Human    14 ILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQIGSPHHHHHH----HHRH 74

  Fly    98 ----------NL-----HSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNP---PSPFRS 144
                      ||     ||....:..:.|.|.|:|...:....:.|      .|.|   |:.:..
Human    75 PQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS------GGYPQCAPAVYSG 133

  Fly   145 NSSSSSI----NSPGTLTTSTMANPYAMGT------LYHSPGV--QTYCGPTDNLSL----AGHY 193
            |.||..:    :..|          ||.|.      ::||.|.  |:....|.|.||    |.|.
Human   134 NLSSPMVQHHHHHQG----------YAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQ 188

  Fly   194 TDMRNSAS----------WYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQF 248
            ...|:.||          |.....|.|:           :|.:...|.                 
Human   189 EACRSPASETSSPAQTFDWMKVKRNPPK-----------TGKVGEYGY----------------- 225

  Fly   249 PLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAK 313
             |.|....|..||..|:.|||:.|...:||:...|..:|:.:.|..|||||||||.|.|.|::.|
Human   226 -LGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREK 289

  Fly   314 EKAMAEQNQHNQPASSPRRVAVPVLVKDGKPCSGNNSSSQSQQHGTNSTSAGNNTGSANN 373
            |..:.     ..||:.|                ||:..::.....::|:....:.||:.:
Human   290 EGLLP-----ISPATPP----------------GNDEKAEESSEKSSSSPCVPSPGSSTS 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 24/55 (44%)
HOXA1NP_005513.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 61..80 6/22 (27%)
Interaction with OGT. /evidence=ECO:0000250|UniProtKB:P09022 75..203 32/143 (22%)
COG5576 176..>286 CDD:227863 39/138 (28%)
Antp-type hexapeptide 204..209 1/4 (25%)
Homeodomain 233..286 CDD:459649 24/52 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 281..335 13/69 (19%)

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