Protein Alignment scro and pdx1

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_571518.2
• Gene: pdx1 / 30721
• ZFINID: ZDB-GENE-990415-122
• Length: 246
• Species: Danio rerio
• Alignment Length: 207
• Identity: 56/207 - (27%)
• Similarity: 80/207 - (38%)
• Gaps: 41/207 - (19%)

  Fly   137 NPPSPFRSNSSSSSINSP------GTLTTSTMANPYA----MGTLYHSP-----GVQTYCGPTDN 186
            |||.......:.|...||      ..||..|..|..:    .|...|.|     .:|:..|..|:
Zfish    31 NPPPCLYMRQAHSVYASPLGAQDQPNLTDITSYNMSSRDDLAGPHLHLPQTSQTSLQSLGGYGDS 95

  Fly   187 LSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLA 251
            |.|.|..........|               |.|:.|.|.:..|..:|          |......
Zfish    96 LDLCGDRNRYHLPFPW---------------MKSTKSHTHAWKGQWTG----------PYMVEAE 135

  Fly   252 QRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKA 316
            :.::.|..:|:||:.|||:.|...:|:|.|.|..||..:.||...:||||||.|.|.|:: ::|.
Zfish   136 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELALTLSLTERHIKIWFQNRRMKWKKE-EDKR 199

  Fly   317 MAEQNQHNQPAS 328
            .|......|.:|
Zfish   200 RARGVDPEQDSS 211

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	24/55 (44%)
pdx1	NP_571518.2	Homeodomain	138..194	CDD:459649	24/55 (44%)