DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and hoxb1b

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_571217.2 Gene:hoxb1b / 30374 ZFINID:ZDB-GENE-980526-290 Length:307 Species:Danio rerio


Alignment Length:338 Identity:75/338 - (22%)
Similarity:123/338 - (36%) Gaps:98/338 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 LHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSS--------------SS 149
            ::|....|::|...:|..|..... |:|:.|.        ||...|.:|              |:
Zfish     1 MNSYLDYTIYNRGSNTYSSKVGCF-PVEQEYL--------PSACASTNSYIPEGRPVGGNTFTSA 56

  Fly   150 SINSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPT-----------------DNLSL-------- 189
            ...:.||......:.|:.:.......|...:|..|                 |::.|        
Zfish    57 PHETHGTSYAQIQSQPFHLNVDMGKTGHSNFCKQTRPPHSDYGHQHVLTQADDHMRLQSPGFSVV 121

  Fly   190 -----AGHYTDMR-----NSASWYGSTA-NDPR------FAISRLMSSSASGTMSHMGNMSGLAA 237
                 .|.|::..     .|||.|.|.| .:|.      |:..::...|.|.:.:::........
Zfish   122 NMGANIGTYSESNCRPGSVSASHYQSYAYGEPEPHGYGSFSKYQVSPDSDSDSKTNIKQAPTFDW 186

  Fly   238 CSVSDSKPLQFPLA------QRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQ 296
            ..|..:.|....:|      |:...|..||..|:.|||:.|...:||:...|..:|:.:.|..||
Zfish   187 MKVKRNPPKTVKVAEYGIHGQQNIIRTNFTTKQLTELEKEFHFNKYLTRARRVEVAATLELNETQ 251

  Fly   297 VKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSP--RRVAVPVLVKDGKPCSGNNSSSQSQQHGT 359
            |||||||.|.|.|::.||            .::|  :||.:         |    ||.|:..|.|
Zfish   252 VKIWFQNRRMKQKKREKE------------GTAPVIKRVTL---------C----SSGQNADHST 291

  Fly   360 NSTSAGNNTGSAN 372
            :|:...:.|..::
Zfish   292 SSSPGASPTSDSS 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 24/55 (44%)
hoxb1bNP_571217.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..178 3/18 (17%)
Antp-type hexapeptide 183..188 0/4 (0%)
Homeodomain 212..265 CDD:459649 24/52 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 265..307 13/65 (20%)

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